CRISPRone

CRISPRone report for GCA_002216335.1_ASM221633v1

♦ Seq 1: NKXZ01000036.1 Pseudomonas aeruginosa strain Pae111 NODE_36_length_48575_cov_10.7629, whole genome shotgun sequence

⇒Summary: seq-len = 48575 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 387-11007 bp Zoom in on locus 1 x6 x29 CRISPR array Location: 387-715 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 387-715 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09718:cas1 Type: universal Location: 979-1953 bp Gene: COG1203:cas3 Type: Type-I Location: 1950-5180 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5238-6542 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6529-7512 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7523-8551 bp Gene: cd09739:cas6f Type: other Location: 8555-9118 bp CRISPR array Location: 9301-11007 bp Num of repeats: 29 Spacers: s6-s33 CRISPR array Location: 9301-11007 bp Num of repeats: 29 Spacers: s6-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 387-715 bp]: array | spacers
           [Locus range 9301-11007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NKXZ01000031.1 Pseudomonas aeruginosa strain Pae111 NODE_31_length_68808_cov_16.4433, whole genome shotgun sequence

⇒Summary: seq-len = 68808 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33743-42408 bp Zoom in on locus 1 x14 CRISPR array Location: 33743-34632 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 33743-34632 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09725:cas2 Type: universal Location: 34814-35104 bp Gene: cd09721:cas1 Type: universal Location: 35114-36037 bp Gene: pfam01930:cas4 Type: Type-I Location: 36157-36789 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 36808-37677 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 37689-39452 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 39449-40123 bp Gene: cd09641:cas3HD Type: Type-I Location: 40174-42408 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33743-34632 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NKXZ01000014.1 Pseudomonas aeruginosa strain Pae111 NODE_14_length_164379_cov_12.6895, whole genome shotgun sequence

⇒Summary: seq-len = 164379 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 388-1736 bp Zoom in on locus 1 x23 CRISPR array Location: 388-1736 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 388-1736 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 388-1736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)