CRISPRone

CRISPRone report for GCA_002216355.1_ASM221635v1

♦ Seq 1: NKXX01000019.1 Pseudomonas aeruginosa strain Pae113 NODE_19_length_122392_cov_23.0292, whole genome shotgun sequence

⇒Summary: seq-len = 122392 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183-991 bp Zoom in on locus 1 x14 CRISPR array Location: 183-991 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 183-991 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 183-991 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NKXX01000013.1 Pseudomonas aeruginosa strain Pae113 NODE_13_length_202393_cov_28.2285, whole genome shotgun sequence

⇒Summary: seq-len = 202393 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33711-42443 bp Zoom in on locus 1 x15 CRISPR array Location: 33711-34667 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 33711-34667 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09725:cas2 Type: universal Location: 34849-35139 bp Gene: cd09721:cas1 Type: universal Location: 35149-36072 bp Gene: pfam01930:cas4 Type: Type-I Location: 36192-36824 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 36843-37712 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 37724-39487 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 39484-40158 bp Gene: cd09641:cas3HD Type: Type-I Location: 40209-42443 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33711-34667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NKXX01000028.1 Pseudomonas aeruginosa strain Pae113 NODE_28_length_65693_cov_20.0762, whole genome shotgun sequence

⇒Summary: seq-len = 65693 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183-10742 bp Zoom in on locus 1 x16 x18 CRISPR array Location: 183-1111 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 183-1111 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 1372-2346 bp Gene: COG1203:cas3 Type: Type-I Location: 2343-5573 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5631-6935 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6922-7905 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7916-8944 bp Gene: cd09739:cas6f Type: other Location: 8948-9511 bp CRISPR array Location: 9694-10742 bp Num of repeats: 18 Spacers: s16-s32 CRISPR array Location: 9694-10742 bp Num of repeats: 18 Spacers: s16-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 183-1111 bp]: array | spacers
           [Locus range 9694-10742 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)