CRISPRone

CRISPRone report for GCA_002216505.1_ASM221650v1

♦ Seq 1: NKXV01000024.1 Pseudomonas aeruginosa strain PaEB1 NODE_24_length_69561_cov_40.7427, whole genome shotgun sequence

⇒Summary: seq-len = 69561 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20999-31260 bp Zoom in on locus 1 x12 x17 CRISPR array Location: 20999-21687 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 20999-21687 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 21951-22925 bp Gene: COG1203:cas3 Type: Type-I Location: 22922-26152 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26210-27514 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27501-28484 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28495-29523 bp Gene: cd09739:cas6f Type: other Location: 29527-30090 bp CRISPR array Location: 30273-31260 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 30273-31260 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20999-21687 bp]: array | spacers
           [Locus range 30273-31260 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NKXV01000001.1 Pseudomonas aeruginosa strain PaEB1 NODE_1_length_735709_cov_56.9469, whole genome shotgun sequence

⇒Summary: seq-len = 735709 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 334100-335267 bp Zoom in on locus 1 x20 CRISPR array Location: 334100-335267 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 334100-335267 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 334100-335267 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)