CRISPRone

CRISPRone report for GCA_002234355.1_ASM223435v1

♦ Seq 1: CP022524.1 Clostridioides difficile strain DH/NAP11/106/ST-42 chromosome, complete genome

⇒Summary: seq-len = 4087127 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1307572-1307931 bp 2 Locus 2: 1516045-1516340 bp 3 Locus 3: 1626664-1627754 bp 4 Locus 4: 1803151-1804367 bp 5 Locus 5: 2122234-2122393 bp 6 Locus 6: 2173304-2174710 bp 7 Locus 7: 2523848-2524862 bp 8 Locus 8: 2686840-2694705 bp 9 Locus 9: 2767972-2768529 bp 10 Locus 10: 3271953-3283253 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 Zoom in on locus 3 x17 Zoom in on locus 4 x19 Zoom in on locus 5 x3 Zoom in on locus 6 x22 Zoom in on locus 7 x16 Zoom in on locus 8 Zoom in on locus 9 x9 Zoom in on locus 10 x27 CRISPR array Location: 1307572-1307931 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1307572-1307931 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1516045-1516340 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1516045-1516340 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1626664-1627754 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 1626664-1627754 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 1803151-1804367 bp Num of repeats: 19 Spacers: s26-s43 CRISPR array Location: 1803151-1804367 bp Num of repeats: 19 Spacers: s26-s43 CRISPR array Location: 2122234-2122393 bp Num of repeats: 3 Spacers: s44-s45 CRISPR array Location: 2122234-2122393 bp Num of repeats: 3 Spacers: s44-s45 CRISPR array Location: 2173304-2174710 bp Num of repeats: 22 Spacers: s46-s66 CRISPR array Location: 2173304-2174710 bp Num of repeats: 22 Spacers: s46-s66 CRISPR array Location: 2523848-2524862 bp Num of repeats: 16 Spacers: s67-s81 CRISPR array Location: 2523848-2524862 bp Num of repeats: 16 Spacers: s67-s81 Gene: cd09641:cas3HD Type: Type-I Location: 2686840-2689248 bp Gene: cd09693:cas5 Type: Type-I Location: 2689275-2690072 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2690088-2691101 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2691121-2692596 bp Gene: pfam01881:cas6 Type: other Location: 2692601-2693338 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2693596-2694705 bp CRISPR array Location: 2767972-2768529 bp Num of repeats: 9 Spacers: s82-s89 CRISPR array Location: 2767972-2768529 bp Num of repeats: 9 Spacers: s82-s89 CRISPR array Location: 3271953-3273688 bp Num of repeats: 27 Spacers: s90-s115 CRISPR array Location: 3271953-3273688 bp Num of repeats: 27 Spacers: s90-s115 Gene: cd09725:cas2 Type: universal Location: 3273872-3274138 bp Gene: cd09722:cas1 Type: universal Location: 3274141-3275121 bp Gene: pfam01930:cas4 Type: Type-I Location: 3275124-3275642 bp Gene: COG1203:cas3 Type: Type-I Location: 3275690-3278011 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3278022-3278723 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3278725-3279639 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3279641-3281518 bp Gene: pfam01881:cas6 Type: other Location: 3281524-3282318 bp Gene: pfam13280:WYL Type: other Location: 3282339-3283253 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1307572-1307931 bp]: array | spacers
           [Locus range 1516045-1516340 bp]: array | spacers
           [Locus range 1626664-1627754 bp]: array | spacers
           [Locus range 1803151-1804367 bp]: array | spacers
           [Locus range 2122234-2122393 bp]: array | spacers
           [Locus range 2173304-2174710 bp]: array | spacers
           [Locus range 2523848-2524862 bp]: array | spacers
           [Locus range 2767972-2768529 bp]: array | spacers
           [Locus range 3271953-3273688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)