CRISPRone

CRISPRone report for GCA_002237055.1_ASM223705v1

♦ Seq 1: MVHB01000009.1 Pseudomonas aeruginosa strain ATCC BAA-2114 IPC1582_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 409076 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 407576-408563 bp Zoom in on locus 1 x17 CRISPR array Location: 407576-408563 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 407576-408563 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 407576-408563 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MVHB01000017.1 Pseudomonas aeruginosa strain ATCC BAA-2114 IPC1582_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 49432 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 515-10645 bp Zoom in on locus 1 x10 x17 CRISPR array Location: 515-1083 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 515-1083 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1334-2308 bp Gene: COG1203:cas3 Type: Type-I Location: 2305-5535 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5593-6897 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6884-7867 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7878-8906 bp Gene: cd09739:cas6f Type: other Location: 8910-9473 bp CRISPR array Location: 9658-10645 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 9658-10645 bp Num of repeats: 17 Spacers: s10-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 515-1083 bp]: array | spacers
           [Locus range 9658-10645 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)