CRISPRone

CRISPRone report for GCA_002237075.1_ASM223707v1

♦ Seq 1: MVGX01000001.1 Pseudomonas aeruginosa strain ATCC BAA-2110 IPC1578_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 933457 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 407213-408320 bp Zoom in on locus 1 x19 CRISPR array Location: 407213-408320 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 407213-408320 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 407213-408320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MVGX01000018.1 Pseudomonas aeruginosa strain ATCC BAA-2110 IPC1578_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 69992 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38551-48451 bp Zoom in on locus 1 x16 x7 CRISPR array Location: 38551-39480 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 38551-39480 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 39663-40226 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40230-41258 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41269-42252 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42239-43543 bp Gene: COG1203:cas3 Type: Type-I Location: 43601-46831 bp Gene: cd09718:cas1 Type: universal Location: 46828-47802 bp CRISPR array Location: 48064-48451 bp Num of repeats: 7 Spacers: s16-s21 CRISPR array Location: 48064-48451 bp Num of repeats: 7 Spacers: s16-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38551-39480 bp]: array | spacers
           [Locus range 48064-48451 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)