CRISPRone

CRISPRone report for GCA_002237085.1_ASM223708v1

♦ Seq 1: MVGZ01000014.1 Pseudomonas aeruginosa strain ATCC BAA-2112 IPC1580_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 48532 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38014-47493 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 38014-38282 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 38014-38282 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09739:cas6f Type: other Location: 38465-39028 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39032-40060 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40071-41054 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41041-42345 bp Gene: COG1203:cas3 Type: Type-I Location: 42403-45633 bp Gene: cd09718:cas1 Type: universal Location: 45630-46604 bp CRISPR array Location: 46865-47493 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 46865-47493 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38014-38282 bp]: array | spacers
           [Locus range 46865-47493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MVGZ01000001.1 Pseudomonas aeruginosa strain ATCC BAA-2112 IPC1580_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1011353 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 516046-516373 bp Zoom in on locus 1 x6 CRISPR array Location: 516046-516373 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 516046-516373 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 516046-516373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)