CRISPRone

CRISPRone report for GCA_002238215.1_ASM223821v1

♦ Seq 1: MVGY01000001.1 Pseudomonas aeruginosa strain ATCC BAA-2111 IPC1579_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 704039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207589-208277 bp Zoom in on locus 1 x12 CRISPR array Location: 207589-208277 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 207589-208277 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207589-208277 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MVGY01000015.1 Pseudomonas aeruginosa strain ATCC BAA-2111 IPC1579_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 122443 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22208-34075 bp Zoom in on locus 1 x25 x25 CRISPR array Location: 22208-23677 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 22208-23677 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 23937-24911 bp Gene: COG1203:cas3 Type: Type-I Location: 24908-28138 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28549-29850 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29837-30820 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30831-31859 bp Gene: cd09739:cas6f Type: other Location: 31863-32426 bp CRISPR array Location: 32611-34075 bp Num of repeats: 25 Spacers: s25-s48 CRISPR array Location: 32611-34075 bp Num of repeats: 25 Spacers: s25-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22208-23677 bp]: array | spacers
           [Locus range 32611-34075 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)