CRISPRone

CRISPRone report for GCA_002239415.1_ASM223941v1

♦ Seq 1: NLAZ01000084.1 Pseudomonas aeruginosa strain Env_58 contig-44, whole genome shotgun sequence

⇒Summary: seq-len = 215244 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105244-116673 bp Zoom in on locus 1 x25 x12 CRISPR array Location: 105244-106738 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 105244-106738 bp Num of repeats: 25 Spacers: s1-s24 Gene: pfam09707:cas2 Type: universal Location: 106803-107102 bp Gene: cd09719:cas1 Type: universal Location: 107099-107989 bp Gene: pfam08798:cas6e Type: other Location: 108016-108555 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 108602-109264 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 109266-110408 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 110418-110948 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 110945-112513 bp Gene: cd09641:cas3HD Type: Type-I Location: 112516-115197 bp CRISPR array Location: 115973-116673 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 115973-116673 bp Num of repeats: 12 Spacers: s25-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 105244-106738 bp]: array | spacers
           [Locus range 115973-116673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)