CRISPRone

CRISPRone report for GCA_002239465.1_ASM223946v1

♦ Seq 1: NLAY01000036.1 Pseudomonas aeruginosa strain Env_62 contig-36, whole genome shotgun sequence

⇒Summary: seq-len = 48666 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37763-48068 bp Zoom in on locus 1 x6 x18 CRISPR array Location: 37763-38091 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 37763-38091 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09739:cas6f Type: other Location: 38274-38837 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38841-39869 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39880-40863 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40850-42151 bp Gene: COG1203:cas3 Type: Type-I Location: 42562-45792 bp Gene: cd09718:cas1 Type: universal Location: 45789-46763 bp CRISPR array Location: 47021-48068 bp Num of repeats: 18 Spacers: s6-s22 CRISPR array Location: 47021-48068 bp Num of repeats: 18 Spacers: s6-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37763-38091 bp]: array | spacers
           [Locus range 47021-48068 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NLAY01000074.1 Pseudomonas aeruginosa strain Env_62 contig-1000067, whole genome shotgun sequence

⇒Summary: seq-len = 163775 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 600-2130 bp Zoom in on locus 1 x26 CRISPR array Location: 600-2130 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 600-2130 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 600-2130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)