CRISPRone

CRISPRone report for GCA_002239535.1_ASM223953v1

♦ Seq 1: NLBC01000024.1 Pseudomonas aeruginosa strain Env_16 contig-1000030, whole genome shotgun sequence

⇒Summary: seq-len = 49959 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1087-11647 bp Zoom in on locus 1 x20 x14 CRISPR array Location: 1087-2258 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1087-2258 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 2518-3492 bp Gene: COG1203:cas3 Type: Type-I Location: 3489-6719 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6777-8081 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8068-9051 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9062-10090 bp Gene: cd09739:cas6f Type: other Location: 10094-10657 bp CRISPR array Location: 10841-11647 bp Num of repeats: 14 Spacers: s20-s32 CRISPR array Location: 10841-11647 bp Num of repeats: 14 Spacers: s20-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1087-2258 bp]: array | spacers
           [Locus range 10841-11647 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)