CRISPRone

CRISPRone report for GCA_002239565.1_ASM223956v1

♦ Seq 1: NLBG01000083.1 Pseudomonas aeruginosa strain Env_1 contig-2000068, whole genome shotgun sequence

⇒Summary: seq-len = 143695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 408-1756 bp Zoom in on locus 1 x23 CRISPR array Location: 408-1756 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 408-1756 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 408-1756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NLBG01000082.1 Pseudomonas aeruginosa strain Env_1 contig-1000068, whole genome shotgun sequence

⇒Summary: seq-len = 49139 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37581-48732 bp Zoom in on locus 1 x20 x18 CRISPR array Location: 37581-38749 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37581-38749 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 38931-39494 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39498-40526 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40537-41520 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41507-42808 bp Gene: COG1203:cas3 Type: Type-I Location: 43219-46449 bp Gene: cd09718:cas1 Type: universal Location: 46446-47420 bp CRISPR array Location: 47685-48732 bp Num of repeats: 18 Spacers: s20-s36 CRISPR array Location: 47685-48732 bp Num of repeats: 18 Spacers: s20-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37581-38749 bp]: array | spacers
           [Locus range 47685-48732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)