CRISPRone

CRISPRone report for GCA_002242855.1_ASM224285v1

♦ Seq 1: LFDH01000021.1 Pseudomonas aeruginosa strain BK6 contig_21, whole genome shotgun sequence

⇒Summary: seq-len = 48353 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-10954 bp Zoom in on locus 1 x23 x13 CRISPR array Location: 285-1633 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 285-1633 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1884-2858 bp Gene: COG1203:cas3 Type: Type-I Location: 2855-6085 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6143-7447 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7434-8417 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8428-9456 bp Gene: cd09739:cas6f Type: other Location: 9460-10023 bp CRISPR array Location: 10207-10954 bp Num of repeats: 13 Spacers: s23-s34 CRISPR array Location: 10207-10954 bp Num of repeats: 13 Spacers: s23-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-1633 bp]: array | spacers
           [Locus range 10207-10954 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LFDH01000056.1 Pseudomonas aeruginosa strain BK6 contig_58, whole genome shotgun sequence

⇒Summary: seq-len = 63038 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48895-58756 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 48895-51261 bp Gene: unk Type: unknown Location: 51654-52301 bp Gene: unk Type: unknown Location: 52367-52735 bp Gene: pfam13280:WYL Type: other Location: 52785-53660 bp Gene: pfam13280:WYL Type: other Location: 55969-56985 bp Gene: mkCas0115:csx3 Type: other Location: 57044-58756 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LFDH01000050.1 Pseudomonas aeruginosa strain BK6 contig_52, whole genome shotgun sequence

⇒Summary: seq-len = 92141 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-733 bp Zoom in on locus 1 x8 CRISPR array Location: 285-733 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 285-733 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 285-733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)