CRISPRone

CRISPRone report for GCA_002263645.1_ASM226364v1

♦ Seq 1: NMRS01000005.1 Pseudomonas aeruginosa strain Ocean-100 scaffold6_cov344_read216, whole genome shotgun sequence

⇒Summary: seq-len = 574862 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 341298-350916 bp Zoom in on locus 1 x28 CRISPR array Location: 341298-343125 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 341298-343125 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09725:cas2 Type: universal Location: 343307-343597 bp Gene: cd09721:cas1 Type: universal Location: 343607-344647 bp Gene: pfam01930:cas4 Type: Type-I Location: 344651-345283 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 345302-346171 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 346168-347961 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 347958-348632 bp Gene: cd09641:cas3HD Type: Type-I Location: 348682-350916 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 341298-343125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NMRS01000029.1 Pseudomonas aeruginosa strain Ocean-100 scaffold30_cov338_read216, whole genome shotgun sequence

⇒Summary: seq-len = 78039 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65745-77030 bp Zoom in on locus 1 x26 x19 CRISPR array Location: 65745-67273 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 65745-67273 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09739:cas6f Type: other Location: 67522-68085 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 68089-69117 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 69128-70111 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 70098-71402 bp Gene: COG1203:cas3 Type: Type-I Location: 71460-74690 bp Gene: cd09718:cas1 Type: universal Location: 74687-75661 bp CRISPR array Location: 75923-77030 bp Num of repeats: 19 Spacers: s26-s43 CRISPR array Location: 75923-77030 bp Num of repeats: 19 Spacers: s26-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 65745-67273 bp]: array | spacers
           [Locus range 75923-77030 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)