CRISPRone

CRISPRone report for GCA_002285195.1_ASM228519v1

♦ Seq 1: NQZU01000031.1 Pseudomonas aeruginosa strain P27b NODE_31_length_68771_cov_23.5222, whole genome shotgun sequence

⇒Summary: seq-len = 68771 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26451-35051 bp Zoom in on locus 1 x13 Gene: cd09641:cas3HD Type: Type-I Location: 26451-28685 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 28736-29410 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 29407-31170 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 31182-32051 bp Gene: pfam01930:cas4 Type: Type-I Location: 32070-32702 bp Gene: cd09721:cas1 Type: universal Location: 32822-33745 bp Gene: cd09725:cas2 Type: universal Location: 33755-34045 bp CRISPR array Location: 34227-35051 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 34227-35051 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34227-35051 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NQZU01000008.1 Pseudomonas aeruginosa strain P27b NODE_8_length_232246_cov_16.3081, whole genome shotgun sequence

⇒Summary: seq-len = 232246 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182744-194011 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 182744-183913 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 182744-183913 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 184173-185147 bp Gene: COG1203:cas3 Type: Type-I Location: 185144-188374 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 188785-190086 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 190073-191056 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 191067-192095 bp Gene: cd09739:cas6f Type: other Location: 192099-192662 bp CRISPR array Location: 192847-194011 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 192847-194011 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 182744-183913 bp]: array | spacers
           [Locus range 192847-194011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NQZU01000003.1 Pseudomonas aeruginosa strain P27b NODE_3_length_519671_cov_17.6796, whole genome shotgun sequence

⇒Summary: seq-len = 519671 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 219534-219801 bp Zoom in on locus 1 x5 CRISPR array Location: 219534-219801 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 219534-219801 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 219534-219801 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)