CRISPRone

CRISPRone report for GCA_002285375.1_ASM228537v1

♦ Seq 1: NRET01000071.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_72_length_1010_cov_81.0136, whole genome shotgun sequence

⇒Summary: seq-len = 1010 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61-869 bp Zoom in on locus 1 x14 CRISPR array Location: 61-869 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 61-869 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61-869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRET01000009.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_9_length_249443_cov_67.2778, whole genome shotgun sequence

⇒Summary: seq-len = 249443 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53797-64939 bp Zoom in on locus 1 x8 x18 CRISPR array Location: 53797-54253 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 53797-54253 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 55028-57736 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 58098-59666 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 59663-60193 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 60203-61345 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 61347-62009 bp Gene: pfam08798:cas6e Type: other Location: 61984-62595 bp Gene: cd09719:cas1 Type: universal Location: 62622-63512 bp Gene: pfam09707:cas2 Type: universal Location: 63509-63808 bp CRISPR array Location: 63873-64939 bp Num of repeats: 18 Spacers: s8-s24 CRISPR array Location: 63873-64939 bp Num of repeats: 18 Spacers: s8-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53797-54253 bp]: array | spacers
           [Locus range 63873-64939 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRET01000032.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_32_length_46282_cov_63.6901, whole genome shotgun sequence

⇒Summary: seq-len = 46282 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94-9935 bp Zoom in on locus 1 x6 x16 CRISPR array Location: 94-423 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 94-423 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09718:cas1 Type: universal Location: 683-1657 bp Gene: COG1203:cas3 Type: Type-I Location: 1654-4884 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4942-6246 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6233-7216 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7227-8255 bp Gene: cd09739:cas6f Type: other Location: 8259-8822 bp CRISPR array Location: 9007-9935 bp Num of repeats: 16 Spacers: s6-s20 CRISPR array Location: 9007-9935 bp Num of repeats: 16 Spacers: s6-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 94-423 bp]: array | spacers
           [Locus range 9007-9935 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRET01000020.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_20_length_115232_cov_67.383, whole genome shotgun sequence

⇒Summary: seq-len = 115232 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61-1049 bp Zoom in on locus 1 x17 CRISPR array Location: 61-1049 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 61-1049 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61-1049 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)