CRISPRone

CRISPRone report for GCA_002290825.1_ASM229082v1

♦ Seq 1: NRIT01000041.1 Pseudomonas aeruginosa strain QSD3 UMdenovoContig30, whole genome shotgun sequence

⇒Summary: seq-len = 254 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-268 bp Zoom in on locus 1 x5 CRISPR array Location: 0-268 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-268 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-268 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRIT01000050.1 Pseudomonas aeruginosa strain QSD3 UMdenovoContig27, whole genome shotgun sequence

⇒Summary: seq-len = 10153 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-10130 bp Zoom in on locus 1 x21 x6 CRISPR array Location: 1-1222 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1-1222 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 1404-1907 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1970-2998 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3009-3992 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3979-5283 bp Gene: COG1203:cas3 Type: Type-I Location: 5341-8571 bp Gene: COG1518:cas1 Type: universal Location: 8735-9541 bp CRISPR array Location: 9803-10130 bp Num of repeats: 6 Spacers: s21-s25 CRISPR array Location: 9803-10130 bp Num of repeats: 6 Spacers: s21-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-1222 bp]: array | spacers
           [Locus range 9803-10130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRIT01000056.1 Pseudomonas aeruginosa strain QSD3 UMdenovoContig141, whole genome shotgun sequence

⇒Summary: seq-len = 260 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-266 bp Zoom in on locus 1 x5 CRISPR array Location: 0-266 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-266 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRIT01000039.1 Pseudomonas aeruginosa strain QSD3 UMdenovoContig29, whole genome shotgun sequence

⇒Summary: seq-len = 444 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11-457 bp Zoom in on locus 1 x8 CRISPR array Location: 11-457 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 11-457 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11-457 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)