CRISPRone

CRISPRone report for GCA_002300535.1_ASM230053v1

♦ Seq 1: NTHO01001426.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_1426, whole genome shotgun sequence

⇒Summary: seq-len = 2728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-133 bp Zoom in on locus 1 x3 CRISPR array Location: 0-133 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-133 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NTHO01002189.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_2189, whole genome shotgun sequence

⇒Summary: seq-len = 1708 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1569 bp Zoom in on locus 1 Gene: cd09673:cas3f Type: Subtype-I-F Location: 2-598 bp Gene: cd09718:cas1 Type: universal Location: 595-1569 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NTHO01001295.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_1295, whole genome shotgun sequence

⇒Summary: seq-len = 859 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-859 bp Zoom in on locus 1 x15 CRISPR array Location: 0-859 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 0-859 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NTHO01000029.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_29, whole genome shotgun sequence

⇒Summary: seq-len = 3303 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92-3300 bp Zoom in on locus 1 Gene: cd09739:cas6f Type: other Location: 92-655 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 659-1687 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1698-2681 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2668-3300 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NTHO01001296.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_1296, whole genome shotgun sequence

⇒Summary: seq-len = 208 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-209 bp Zoom in on locus 1 x4 CRISPR array Location: 1-209 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-209 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-209 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: NTHO01000874.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_874, whole genome shotgun sequence

⇒Summary: seq-len = 1158 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1169 bp Zoom in on locus 1 x20 CRISPR array Location: 1-1169 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1-1169 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-1169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: NTHO01001842.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_1842, whole genome shotgun sequence

⇒Summary: seq-len = 829 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 613-828 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 613-828 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: NTHO01002061.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_2061, whole genome shotgun sequence

⇒Summary: seq-len = 254 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-259 bp Zoom in on locus 1 x5 CRISPR array Location: 0-259 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-259 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: NTHO01000254.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_254, whole genome shotgun sequence

⇒Summary: seq-len = 36123 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22367-26738 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 22367-23209 bp Gene: unk Type: unknown Location: 23487-23708 bp Gene: pfam13280:WYL Type: other Location: 23951-24967 bp Gene: mkCas0115:csx3 Type: other Location: 25026-26738 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: NTHO01000471.1 Pseudomonas aeruginosa strain ICBRVIM-2 NL26_S26_L001_R1_001__paired__contig_471, whole genome shotgun sequence

⇒Summary: seq-len = 5639 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83-5555 bp Zoom in on locus 1 Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 83-733 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 740-1783 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 1783-2538 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 2567-3292 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 3381-5555 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)