CRISPRone

CRISPRone report for GCA_002300835.1_ASM230083v1

♦ Seq 1: MNBA01000122.1 Clostridioides difficile strain 5475-DH/ST42 5475_contig000128, whole genome shotgun sequence

⇒Summary: seq-len = 400467 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp 2 Locus 2: 394408-394703 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers
           [Locus range 394408-394703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MNBA01000144.1 Clostridioides difficile strain 5475-DH/ST42 5475_contig000150, whole genome shotgun sequence

⇒Summary: seq-len = 566957 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 161402-161561 bp 2 Locus 2: 212474-213880 bp 3 Locus 3: 563020-564034 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 Zoom in on locus 3 x16 CRISPR array Location: 161402-161561 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 161402-161561 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 212474-213880 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 212474-213880 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 563020-564034 bp Num of repeats: 16 Spacers: s24-s38 CRISPR array Location: 563020-564034 bp Num of repeats: 16 Spacers: s24-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 161402-161561 bp]: array | spacers
           [Locus range 212474-213880 bp]: array | spacers
           [Locus range 563020-564034 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MNBA01000169.1 Clostridioides difficile strain 5475-DH/ST42 5475_contig000175, whole genome shotgun sequence

⇒Summary: seq-len = 781555 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 516434-527445 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 516434-517321 bp Gene: pfam01881:cas6 Type: other Location: 517399-518136 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 518142-520019 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 520021-520935 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 520937-521638 bp Gene: COG1203:cas3 Type: Type-I Location: 521649-523970 bp Gene: pfam01930:cas4 Type: Type-I Location: 523985-524536 bp Gene: cd09722:cas1 Type: universal Location: 524539-525519 bp Gene: cd09725:cas2 Type: universal Location: 525522-525788 bp CRISPR array Location: 525972-527445 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 525972-527445 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 525972-527445 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MNBA01000097.1 Clostridioides difficile strain 5475-DH/ST42 5475_contig000102, whole genome shotgun sequence

⇒Summary: seq-len = 485208 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158795-166660 bp 2 Locus 2: 239928-240485 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 158795-161203 bp Gene: cd09693:cas5 Type: Type-I Location: 161230-162027 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162043-163056 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163076-164551 bp Gene: pfam01881:cas6 Type: other Location: 164556-165293 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165551-166660 bp CRISPR array Location: 239928-240485 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 239928-240485 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239928-240485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MNBA01000108.1 Clostridioides difficile strain 5475-DH/ST42 5475_contig000113, whole genome shotgun sequence

⇒Summary: seq-len = 196059 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39536 bp Zoom in on locus 1 x20 CRISPR array Location: 38255-39536 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 38255-39536 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39536 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MNBA01000118.1 Clostridioides difficile strain 5475-DH/ST42 5475_contig000124, whole genome shotgun sequence

⇒Summary: seq-len = 64057 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45156-46245 bp Zoom in on locus 1 x17 CRISPR array Location: 45156-46245 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 45156-46245 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45156-46245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)