CRISPRone

CRISPRone report for GCA_002300845.1_ASM230084v1

♦ Seq 1: MNBB01000002.1 Clostridioides difficile strain 5477-AQ/ST26 5477_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 485175 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 193860-194480 bp 2 Locus 2: 400084-400440 bp Zoom in on locus 1 x10 Zoom in on locus 2 x6 CRISPR array Location: 193860-194480 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 193860-194480 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 400084-400440 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 400084-400440 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 193860-194480 bp]: array | spacers
           [Locus range 400084-400440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MNBB01000008.1 Clostridioides difficile strain 5477-AQ/ST26 5477_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 265677 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18233-18725 bp 2 Locus 2: 108989-110638 bp 3 Locus 3: 257359-259098 bp Zoom in on locus 1 x8 Zoom in on locus 2 x3 x14 Zoom in on locus 3 x27 CRISPR array Location: 18233-18725 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18233-18725 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 108989-109150 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 108989-109150 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 109752-110638 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 109752-110638 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 257359-259098 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 257359-259098 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18233-18725 bp]: array | spacers
           [Locus range 108989-109150 bp]: array | spacers
           [Locus range 109752-110638 bp]: array | spacers
           [Locus range 257359-259098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MNBB01000014.1 Clostridioides difficile strain 5477-AQ/ST26 5477_contig000014, whole genome shotgun sequence

⇒Summary: seq-len = 112869 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60042-67324 bp Zoom in on locus 1 x17 CRISPR array Location: 60042-61121 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 60042-61121 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 61688-63670 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 63681-64751 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 64772-65920 bp Gene: pfam01881:cas6 Type: other Location: 65922-66686 bp Gene: cd09693:cas5 Type: Type-I Location: 66677-67324 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 60042-61121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MNBB01000001.1 Clostridioides difficile strain 5477-AQ/ST26 5477_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 545436 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46054-46413 bp 2 Locus 2: 119682-127547 bp 3 Locus 3: 292985-294067 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x17 CRISPR array Location: 46054-46413 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 46054-46413 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 119682-120791 bp Gene: pfam01881:cas6 Type: other Location: 121049-121786 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 121791-123266 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123286-124299 bp Gene: cd09693:cas5 Type: Type-I Location: 124315-125112 bp Gene: cd09641:cas3HD Type: Type-I Location: 125139-127547 bp CRISPR array Location: 292985-294067 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 292985-294067 bp Num of repeats: 17 Spacers: s6-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46054-46413 bp]: array | spacers
           [Locus range 292985-294067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MNBB01000003.1 Clostridioides difficile strain 5477-AQ/ST26 5477_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 398656 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255834-267042 bp Zoom in on locus 1 x26 CRISPR array Location: 255834-257504 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 255834-257504 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 257688-257954 bp Gene: cd09722:cas1 Type: universal Location: 257957-258937 bp Gene: pfam01930:cas4 Type: Type-I Location: 258940-259458 bp Gene: COG1203:cas3 Type: Type-I Location: 259506-261827 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261838-262539 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262541-263455 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263457-265307 bp Gene: pfam01881:cas6 Type: other Location: 265313-266107 bp Gene: pfam13280:WYL Type: other Location: 266128-267042 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255834-257504 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MNBB01000004.1 Clostridioides difficile strain 5477-AQ/ST26 5477_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 353874 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 261781-262006 bp 2 Locus 2: 307677-309086 bp Zoom in on locus 1 x4 Zoom in on locus 2 x22 CRISPR array Location: 261781-262006 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 261781-262006 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 307677-309086 bp Num of repeats: 22 Spacers: s4-s24 CRISPR array Location: 307677-309086 bp Num of repeats: 22 Spacers: s4-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 261781-262006 bp]: array | spacers
           [Locus range 307677-309086 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)