CRISPRone

CRISPRone report for GCA_002300955.1_ASM230095v1

♦ Seq 1: MNBU01000014.1 Clostridioides difficile strain 5483-L/ST55 5483_contig000014, whole genome shotgun sequence

⇒Summary: seq-len = 93882 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53111-55654 bp Zoom in on locus 1 x39 CRISPR array Location: 53111-55654 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 53111-55654 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53111-55654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MNBU01000001.1 Clostridioides difficile strain 5483-L/ST55 5483_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 757428 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 290865-297883 bp 2 Locus 2: 497226-509224 bp Zoom in on locus 1 x13 Zoom in on locus 2 x38 Gene: cd09693:cas5 Type: Type-I Location: 290865-291512 bp Gene: pfam01881:cas6 Type: other Location: 291503-292267 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 292269-293417 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 293438-294508 bp Gene: COG1203:cas3 Type: Type-I Location: 294519-296501 bp CRISPR array Location: 297067-297883 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 297067-297883 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam13280:WYL Type: other Location: 497226-498113 bp Gene: pfam01881:cas6 Type: other Location: 498191-498928 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 498934-500811 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 500813-501727 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 501729-502430 bp Gene: cd09641:cas3HD Type: Type-I Location: 502441-504762 bp Gene: pfam01930:cas4 Type: Type-I Location: 504777-505328 bp Gene: cd09722:cas1 Type: universal Location: 505331-506311 bp Gene: cd09725:cas2 Type: universal Location: 506314-506580 bp CRISPR array Location: 506764-509224 bp Num of repeats: 38 Spacers: s13-s49 CRISPR array Location: 506764-509224 bp Num of repeats: 38 Spacers: s13-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 297067-297883 bp]: array | spacers
           [Locus range 506764-509224 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MNBU01000003.1 Clostridioides difficile strain 5483-L/ST55 5483_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 433174 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185253-186408 bp 2 Locus 2: 426297-427382 bp Zoom in on locus 1 x18 Zoom in on locus 2 x17 CRISPR array Location: 185253-186408 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 185253-186408 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 426297-427382 bp Num of repeats: 17 Spacers: s18-s33 CRISPR array Location: 426297-427382 bp Num of repeats: 17 Spacers: s18-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185253-186408 bp]: array | spacers
           [Locus range 426297-427382 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MNBU01000011.1 Clostridioides difficile strain 5483-L/ST55 5483_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 112341 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18337-18698 bp 2 Locus 2: 98051-98276 bp Zoom in on locus 1 x6 Zoom in on locus 2 x4 CRISPR array Location: 18337-18698 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 18337-18698 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 98051-98276 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 98051-98276 bp Num of repeats: 4 Spacers: s6-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18337-18698 bp]: array | spacers
           [Locus range 98051-98276 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MNBU01000002.1 Clostridioides difficile strain 5483-L/ST55 5483_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 678614 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 539-7037 bp 2 Locus 2: 172400-173952 bp Zoom in on locus 1 Zoom in on locus 2 x24 Gene: pfam01881:cas6 Type: other Location: 539-1276 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1281-2756 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2776-3789 bp Gene: cd09693:cas5 Type: Type-I Location: 3805-4602 bp Gene: cd09641:cas3HD Type: Type-I Location: 4629-7037 bp CRISPR array Location: 172400-173952 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 172400-173952 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 172400-173952 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MNBU01000005.1 Clostridioides difficile strain 5483-L/ST55 5483_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 177574 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102306-102996 bp Zoom in on locus 1 x11 CRISPR array Location: 102306-102996 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 102306-102996 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102306-102996 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)