CRISPRone

CRISPRone report for GCA_002301025.1_ASM230102v1

♦ Seq 1: MOPE01000079.1 Clostridioides difficile strain 5488-DH/ST42 5488_contig000079, whole genome shotgun sequence

⇒Summary: seq-len = 485217 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158795-166660 bp 2 Locus 2: 239928-240485 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 158795-161203 bp Gene: cd09693:cas5 Type: Type-I Location: 161230-162027 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162043-163056 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163076-164551 bp Gene: pfam01881:cas6 Type: other Location: 164556-165293 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165551-166660 bp CRISPR array Location: 239928-240485 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 239928-240485 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239928-240485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPE01000068.1 Clostridioides difficile strain 5488-DH/ST42 5488_contig000068, whole genome shotgun sequence

⇒Summary: seq-len = 147535 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143598-144612 bp Zoom in on locus 1 x16 CRISPR array Location: 143598-144612 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 143598-144612 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143598-144612 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPE01000067.1 Clostridioides difficile strain 5488-DH/ST42 5488_contig000067, whole genome shotgun sequence

⇒Summary: seq-len = 485852 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp 2 Locus 2: 394408-394900 bp Zoom in on locus 1 x6 Zoom in on locus 2 x8 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394408-394900 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 394408-394900 bp Num of repeats: 8 Spacers: s6-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers
           [Locus range 394408-394900 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPE01000076.1 Clostridioides difficile strain 5488-DH/ST42 5488_contig000076, whole genome shotgun sequence

⇒Summary: seq-len = 165387 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5111-5270 bp 2 Locus 2: 56183-57589 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 CRISPR array Location: 5111-5270 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5111-5270 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 56183-57589 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 56183-57589 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5111-5270 bp]: array | spacers
           [Locus range 56183-57589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPE01000092.1 Clostridioides difficile strain 5488-DH/ST42 5488_contig000092, whole genome shotgun sequence

⇒Summary: seq-len = 352240 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp Zoom in on locus 1 x19 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPE01000113.1 Clostridioides difficile strain 5488-DH/ST42 5488_contig000113, whole genome shotgun sequence

⇒Summary: seq-len = 154582 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135681-136770 bp Zoom in on locus 1 x17 CRISPR array Location: 135681-136770 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 135681-136770 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135681-136770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOPE01000077.1 Clostridioides difficile strain 5488-DH/ST42 5488_contig000077, whole genome shotgun sequence

⇒Summary: seq-len = 480809 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87812-99112 bp Zoom in on locus 1 x27 CRISPR array Location: 87812-89547 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 87812-89547 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 89731-89997 bp Gene: cd09722:cas1 Type: universal Location: 90000-90980 bp Gene: pfam01930:cas4 Type: Type-I Location: 90983-91501 bp Gene: COG1203:cas3 Type: Type-I Location: 91549-93870 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 93881-94582 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 94584-95498 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 95500-97377 bp Gene: pfam01881:cas6 Type: other Location: 97383-98177 bp Gene: pfam13280:WYL Type: other Location: 98198-99112 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87812-89547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)