CRISPRone

CRISPRone report for GCA_002301035.1_ASM230103v1

♦ Seq 1: MOPD01000022.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000022, whole genome shotgun sequence

⇒Summary: seq-len = 57718 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45182-45803 bp Zoom in on locus 1 x10 CRISPR array Location: 45182-45803 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45182-45803 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45182-45803 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPD01000033.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000033, whole genome shotgun sequence

⇒Summary: seq-len = 14331 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2652-5879 bp Zoom in on locus 1 x9 x5 CRISPR array Location: 2652-3203 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2652-3203 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5587-5879 bp Num of repeats: 5 Spacers: s9-s12 CRISPR array Location: 5587-5879 bp Num of repeats: 5 Spacers: s9-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2652-3203 bp]: array | spacers
           [Locus range 5587-5879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPD01000006.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 232210 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103968-104261 bp Zoom in on locus 1 x5 CRISPR array Location: 103968-104261 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 103968-104261 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 103968-104261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPD01000001.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 522025 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252358-263372 bp Zoom in on locus 1 x23 CRISPR array Location: 252358-253834 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 252358-253834 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 254018-254284 bp Gene: cd09722:cas1 Type: universal Location: 254287-255267 bp Gene: pfam01930:cas4 Type: Type-I Location: 255270-255788 bp Gene: COG1203:cas3 Type: Type-I Location: 255836-258157 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258168-258869 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258871-259785 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259787-261637 bp Gene: pfam01881:cas6 Type: other Location: 261643-262437 bp Gene: pfam13280:WYL Type: other Location: 262458-263372 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252358-253834 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPD01000008.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 178956 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2998-3422 bp Zoom in on locus 1 x7 CRISPR array Location: 2998-3422 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2998-3422 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2998-3422 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPD01000007.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 229758 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 152772-160637 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 152772-155180 bp Gene: cd09693:cas5 Type: Type-I Location: 155207-156004 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 156020-157033 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 157053-158528 bp Gene: pfam01881:cas6 Type: other Location: 158533-159270 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 159528-160637 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOPD01000004.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 281058 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86884-87441 bp Zoom in on locus 1 x9 CRISPR array Location: 86884-87441 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 86884-87441 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86884-87441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOPD01000013.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 108441 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104018-104311 bp Zoom in on locus 1 x5 CRISPR array Location: 104018-104311 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 104018-104311 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104018-104311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOPD01000012.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 121285 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59489-60501 bp Zoom in on locus 1 x16 CRISPR array Location: 59489-60501 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 59489-60501 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59489-60501 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOPD01000002.1 Clostridioides difficile strain 5487-NonSp/novelST 5487_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 451803 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92036-92459 bp Zoom in on locus 1 x7 CRISPR array Location: 92036-92459 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 92036-92459 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92036-92459 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)