CRISPRone

CRISPRone report for GCA_002301085.1_ASM230108v1

♦ Seq 1: MOPG01000002.1 Clostridioides difficile strain 5490-CF/ST37 5490_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376803 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194183-194278 bp Zoom in on locus 1 x2 CRISPR array Location: 194183-194278 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194183-194278 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194183-194278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPG01000003.1 Clostridioides difficile strain 5490-CF/ST37 5490_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345431 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95372-106330 bp 2 Locus 2: 157540-167263 bp 3 Locus 3: 247050-247275 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95372-95878 bp Gene: unk Type: unknown Location: 96037-96705 bp Gene: unk Type: unknown Location: 97118-97624 bp Gene: cd06127:DEDDh Type: Type-I Location: 97996-99033 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105845-106330 bp Gene: cd09641:cas3HD Type: Type-I Location: 157540-159948 bp Gene: cd09693:cas5 Type: Type-I Location: 159975-160772 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160788-161801 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161821-163287 bp Gene: pfam01881:cas6 Type: other Location: 163292-164029 bp Gene: unk Type: unknown Location: 164343-164801 bp Gene: cas14:cas14 Type: Type-V Location: 164829-166001 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166154-167263 bp CRISPR array Location: 247050-247275 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247050-247275 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247050-247275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPG01000001.1 Clostridioides difficile strain 5490-CF/ST37 5490_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 529218 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164544-164963 bp 2 Locus 2: 296353-299407 bp 3 Locus 3: 390257-390876 bp 4 Locus 4: 500136-500296 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x4 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 164544-164963 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164544-164963 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 296353-296513 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 296353-296513 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 299181-299407 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 299181-299407 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 390257-390876 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 390257-390876 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 500136-500296 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 500136-500296 bp Num of repeats: 3 Spacers: s21-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164544-164963 bp]: array | spacers
           [Locus range 296353-296513 bp]: array | spacers
           [Locus range 299181-299407 bp]: array | spacers
           [Locus range 390257-390876 bp]: array | spacers
           [Locus range 500136-500296 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)