CRISPRone

CRISPRone report for GCA_002301095.1_ASM230109v1

♦ Seq 1: MOPH01000027.1 Clostridioides difficile strain 5491-N/ST10 5491_contig000027, whole genome shotgun sequence

⇒Summary: seq-len = 29507 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18564-20749 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 18564-18789 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18564-18789 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20589-20749 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 20589-20749 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18564-18789 bp]: array | spacers
           [Locus range 20589-20749 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPH01000001.1 Clostridioides difficile strain 5491-N/ST10 5491_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 468955 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 223007-223432 bp 2 Locus 2: 385852-393717 bp 3 Locus 3: 466998-467092 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 223007-223432 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 223007-223432 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 385852-388260 bp Gene: cd09693:cas5 Type: Type-I Location: 388287-389084 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 389100-390113 bp Gene: unk Type: unknown Location: 390133-390798 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 390799-391608 bp Gene: pfam01881:cas6 Type: other Location: 391613-392350 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 392608-393717 bp CRISPR array Location: 466998-467092 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 466998-467092 bp Num of repeats: 2 Spacers: s7-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 223007-223432 bp]: array | spacers
           [Locus range 466998-467092 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPH01000004.1 Clostridioides difficile strain 5491-N/ST10 5491_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 276837 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190427-190590 bp Zoom in on locus 1 x3 CRISPR array Location: 190427-190590 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 190427-190590 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190427-190590 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPH01000025.1 Clostridioides difficile strain 5491-N/ST10 5491_contig000025, whole genome shotgun sequence

⇒Summary: seq-len = 43765 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32924-33153 bp Zoom in on locus 1 x4 CRISPR array Location: 32924-33153 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 32924-33153 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32924-33153 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPH01000002.1 Clostridioides difficile strain 5491-N/ST10 5491_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 428035 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252518-262763 bp Zoom in on locus 1 x11 CRISPR array Location: 252518-253198 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252518-253198 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253382-253648 bp Gene: cd09722:cas1 Type: universal Location: 253651-254631 bp Gene: pfam01930:cas4 Type: Type-I Location: 254634-255152 bp Gene: COG1203:cas3 Type: Type-I Location: 255200-257521 bp Gene: cd09693:cas5 Type: Type-I Location: 257532-258233 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258235-259149 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259151-261028 bp Gene: pfam01881:cas6 Type: other Location: 261034-261771 bp Gene: pfam13280:WYL Type: other Location: 261849-262763 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252518-253198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPH01000021.1 Clostridioides difficile strain 5491-N/ST10 5491_contig000021, whole genome shotgun sequence

⇒Summary: seq-len = 57884 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18605-19293 bp Zoom in on locus 1 x11 CRISPR array Location: 18605-19293 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18605-19293 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18605-19293 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOPH01000009.1 Clostridioides difficile strain 5491-N/ST10 5491_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 190498 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53148-54493 bp Zoom in on locus 1 x21 CRISPR array Location: 53148-54493 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 53148-54493 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53148-54493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOPH01000013.1 Clostridioides difficile strain 5491-N/ST10 5491_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 125185 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118787-119211 bp Zoom in on locus 1 x7 CRISPR array Location: 118787-119211 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 118787-119211 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118787-119211 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOPH01000019.1 Clostridioides difficile strain 5491-N/ST10 5491_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 63107 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44917-46656 bp Zoom in on locus 1 x27 CRISPR array Location: 44917-46656 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 44917-46656 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44917-46656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)