CRISPRone

CRISPRone report for GCA_002301125.1_ASM230112v1

♦ Seq 1: MOPJ01000005.1 Clostridioides difficile strain 5493-DH/ST42 5493_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 249166 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102112-102670 bp 2 Locus 2: 175937-183802 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 102112-102670 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 102112-102670 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 175937-177046 bp Gene: pfam01881:cas6 Type: other Location: 177304-178041 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 178046-179521 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 179541-180554 bp Gene: cd09693:cas5 Type: Type-I Location: 180570-181367 bp Gene: cd09641:cas3HD Type: Type-I Location: 181394-183802 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 102112-102670 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPJ01000018.1 Clostridioides difficile strain 5493-DH/ST42 5493_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 43253 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3784-4999 bp Zoom in on locus 1 x19 CRISPR array Location: 3784-4999 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 3784-4999 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3784-4999 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPJ01000007.1 Clostridioides difficile strain 5493-DH/ST42 5493_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 155322 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135681-136770 bp Zoom in on locus 1 x17 CRISPR array Location: 135681-136770 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 135681-136770 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135681-136770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPJ01000003.1 Clostridioides difficile strain 5493-DH/ST42 5493_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 485628 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp 2 Locus 2: 394408-394703 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers
           [Locus range 394408-394703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPJ01000001.1 Clostridioides difficile strain 5493-DH/ST42 5493_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 781311 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 516165-527176 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 516165-517052 bp Gene: pfam01881:cas6 Type: other Location: 517130-517867 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 517873-519750 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 519752-520666 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 520668-521369 bp Gene: COG1203:cas3 Type: Type-I Location: 521380-523701 bp Gene: pfam01930:cas4 Type: Type-I Location: 523716-524267 bp Gene: cd09722:cas1 Type: universal Location: 524270-525250 bp Gene: cd09725:cas2 Type: universal Location: 525253-525519 bp CRISPR array Location: 525703-527176 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 525703-527176 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 525703-527176 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPJ01000002.1 Clostridioides difficile strain 5493-DH/ST42 5493_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 719653 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2924-3939 bp 2 Locus 2: 353078-354485 bp 3 Locus 3: 405397-405557 bp Zoom in on locus 1 x16 Zoom in on locus 2 x22 Zoom in on locus 3 x3 CRISPR array Location: 2924-3939 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 2924-3939 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 353078-354485 bp Num of repeats: 22 Spacers: s16-s36 CRISPR array Location: 353078-354485 bp Num of repeats: 22 Spacers: s16-s36 CRISPR array Location: 405397-405557 bp Num of repeats: 3 Spacers: s37-s38 CRISPR array Location: 405397-405557 bp Num of repeats: 3 Spacers: s37-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2924-3939 bp]: array | spacers
           [Locus range 353078-354485 bp]: array | spacers
           [Locus range 405397-405557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)