CRISPRone

CRISPRone report for GCA_002301145.1_ASM230114v1

♦ Seq 1: MOPK01000009.1 Clostridioides difficile strain 5494-Y/ST110 5494_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 202322 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91856-92017 bp Zoom in on locus 1 x3 CRISPR array Location: 91856-92017 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91856-92017 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91856-92017 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPK01000003.1 Clostridioides difficile strain 5494-Y/ST110 5494_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 328507 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87104-87720 bp 2 Locus 2: 250992-259313 bp Zoom in on locus 1 x10 Zoom in on locus 2 CRISPR array Location: 87104-87720 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 87104-87720 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 250992-253400 bp Gene: cd09693:cas5 Type: Type-I Location: 253427-254224 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 254240-255256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 255276-256751 bp Gene: pfam01881:cas6 Type: other Location: 256756-257493 bp Gene: unk Type: unknown Location: 257594-257770 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 258204-259313 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87104-87720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPK01000021.1 Clostridioides difficile strain 5494-Y/ST110 5494_contig000021, whole genome shotgun sequence

⇒Summary: seq-len = 48823 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44360-44718 bp Zoom in on locus 1 x6 CRISPR array Location: 44360-44718 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44360-44718 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44360-44718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPK01000001.1 Clostridioides difficile strain 5494-Y/ST110 5494_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 531235 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44825-44919 bp 2 Locus 2: 267366-278410 bp Zoom in on locus 1 x2 Zoom in on locus 2 x24 CRISPR array Location: 44825-44919 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44825-44919 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267366-268253 bp Gene: pfam01881:cas6 Type: other Location: 268331-269068 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 269074-270924 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270926-271840 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271842-272543 bp Gene: COG1203:cas3 Type: Type-I Location: 272554-274875 bp Gene: pfam01930:cas4 Type: Type-I Location: 274890-275441 bp Gene: cd09722:cas1 Type: universal Location: 275444-276424 bp Gene: cd09725:cas2 Type: universal Location: 276427-276693 bp CRISPR array Location: 276877-278410 bp Num of repeats: 24 Spacers: s2-s24 CRISPR array Location: 276877-278410 bp Num of repeats: 24 Spacers: s2-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44825-44919 bp]: array | spacers
           [Locus range 276877-278410 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPK01000017.1 Clostridioides difficile strain 5494-Y/ST110 5494_contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 68758 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63753-64770 bp Zoom in on locus 1 x16 CRISPR array Location: 63753-64770 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63753-64770 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63753-64770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPK01000018.1 Clostridioides difficile strain 5494-Y/ST110 5494_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 64148 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45150-45906 bp Zoom in on locus 1 x12 CRISPR array Location: 45150-45906 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 45150-45906 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45150-45906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOPK01000007.1 Clostridioides difficile strain 5494-Y/ST110 5494_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216912 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91936-92364 bp Zoom in on locus 1 x7 CRISPR array Location: 91936-92364 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 91936-92364 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91936-92364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)