CRISPRone

CRISPRone report for GCA_002301165.1_ASM230116v1

♦ Seq 1: MOPL01000035.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000035, whole genome shotgun sequence

⇒Summary: seq-len = 40634 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27212-27442 bp Zoom in on locus 1 x4 CRISPR array Location: 27212-27442 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 27212-27442 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27212-27442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPL01000007.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 136766 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128912-129073 bp Zoom in on locus 1 x3 CRISPR array Location: 128912-129073 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 128912-129073 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128912-129073 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPL01000002.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 272957 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185558-186250 bp Zoom in on locus 1 x11 CRISPR array Location: 185558-186250 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 185558-186250 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185558-186250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPL01000059.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000059, whole genome shotgun sequence

⇒Summary: seq-len = 9167 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3750-4637 bp Zoom in on locus 1 x14 CRISPR array Location: 3750-4637 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 3750-4637 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3750-4637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPL01000051.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000051, whole genome shotgun sequence

⇒Summary: seq-len = 20941 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4095-5642 bp Zoom in on locus 1 x24 CRISPR array Location: 4095-5642 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 4095-5642 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4095-5642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPL01000052.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000052, whole genome shotgun sequence

⇒Summary: seq-len = 17013 bp; # of CRISPR array = 0; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3032 bp Zoom in on locus 1 Gene: cas14:cas14 Type: Type-V Location: 3-131 bp Gene: COG2378:WYL Type: other Location: 770-1681 bp Gene: unk Type: unknown Location: 1796-2263 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2433-3032 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOPL01000006.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 148689 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60734-68600 bp 2 Locus 2: 142702-143324 bp Zoom in on locus 1 Zoom in on locus 2 x10 Gene: cd09641:cas3HD Type: Type-I Location: 60734-63142 bp Gene: cd09693:cas5 Type: Type-I Location: 63169-63975 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 63991-65004 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 65024-66490 bp Gene: pfam01881:cas6 Type: other Location: 66495-67232 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 67491-68600 bp CRISPR array Location: 142702-143324 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 142702-143324 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 142702-143324 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOPL01000009.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 131620 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18802-19295 bp Zoom in on locus 1 x8 CRISPR array Location: 18802-19295 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18802-19295 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18802-19295 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOPL01000013.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 113452 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17323-28736 bp Zoom in on locus 1 x29 Gene: pfam13280:WYL Type: other Location: 17323-18210 bp Gene: pfam01881:cas6 Type: other Location: 18288-19025 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 19031-20908 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20910-21824 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21826-22527 bp Gene: COG1203:cas3 Type: Type-I Location: 22538-24859 bp Gene: pfam01930:cas4 Type: Type-I Location: 24874-25425 bp Gene: cd09722:cas1 Type: universal Location: 25428-26408 bp Gene: cd09725:cas2 Type: universal Location: 26411-26677 bp CRISPR array Location: 26861-28736 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 26861-28736 bp Num of repeats: 29 Spacers: s1-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26861-28736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOPL01000029.1 Clostridioides difficile strain 5495-AF/ST41 5495_contig000029, whole genome shotgun sequence

⇒Summary: seq-len = 47356 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46353-46645 bp Zoom in on locus 1 x5 CRISPR array Location: 46353-46645 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 46353-46645 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46353-46645 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)