CRISPRone

CRISPRone report for GCA_002301245.1_ASM230124v1

♦ Seq 1: MOPP01000209.1 Clostridioides difficile strain 5500-DH/ST42 5500_contig000236, whole genome shotgun sequence

⇒Summary: seq-len = 63946 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45177-46134 bp Zoom in on locus 1 x15 CRISPR array Location: 45177-46134 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 45177-46134 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45177-46134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPP01000427.1 Clostridioides difficile strain 5500-DH/ST42 5500_contig000463, whole genome shotgun sequence

⇒Summary: seq-len = 485655 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp 2 Locus 2: 394408-394703 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers
           [Locus range 394408-394703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPP01000113.1 Clostridioides difficile strain 5500-DH/ST42 5500_contig000130, whole genome shotgun sequence

⇒Summary: seq-len = 458857 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168464-179699 bp Zoom in on locus 1 x26 CRISPR array Location: 168464-170134 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 168464-170134 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 170318-170584 bp Gene: cd09722:cas1 Type: universal Location: 170587-171567 bp Gene: pfam01930:cas4 Type: Type-I Location: 171570-172088 bp Gene: COG1203:cas3 Type: Type-I Location: 172136-174457 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 174468-175169 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 175171-176085 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 176087-177964 bp Gene: pfam01881:cas6 Type: other Location: 177970-178764 bp Gene: pfam13280:WYL Type: other Location: 178785-179699 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 168464-170134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPP01000288.1 Clostridioides difficile strain 5500-DH/ST42 5500_contig000322, whole genome shotgun sequence

⇒Summary: seq-len = 454426 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp 2 Locus 2: 357340-357499 bp 3 Locus 3: 408412-409818 bp Zoom in on locus 1 x19 Zoom in on locus 2 x3 Zoom in on locus 3 x22 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 357340-357499 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 357340-357499 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 408412-409818 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 408412-409818 bp Num of repeats: 22 Spacers: s21-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers
           [Locus range 357340-357499 bp]: array | spacers
           [Locus range 408412-409818 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPP01000108.1 Clostridioides difficile strain 5500-DH/ST42 5500_contig000124, whole genome shotgun sequence

⇒Summary: seq-len = 147237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143560-144314 bp Zoom in on locus 1 x12 CRISPR array Location: 143560-144314 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 143560-144314 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143560-144314 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPP01000150.1 Clostridioides difficile strain 5500-DH/ST42 5500_contig000173, whole genome shotgun sequence

⇒Summary: seq-len = 485165 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244731-245289 bp 2 Locus 2: 318556-326421 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 244731-245289 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244731-245289 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318556-319665 bp Gene: pfam01881:cas6 Type: other Location: 319923-320660 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320665-322140 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322160-323173 bp Gene: cd09693:cas5 Type: Type-I Location: 323189-323986 bp Gene: cd09641:cas3HD Type: Type-I Location: 324013-326421 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244731-245289 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)