CRISPRone

CRISPRone report for GCA_002301255.1_ASM230125v1

♦ Seq 1: MOPO01000002.1 Clostridioides difficile strain 5502-NonSp/novelST 5502_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 374797 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88882-95637 bp Zoom in on locus 1 x9 CRISPR array Location: 88882-89434 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 88882-89434 bp Num of repeats: 9 Spacers: s1-s8 Gene: COG1203:cas3 Type: Type-I Location: 90001-91983 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 91994-93064 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 93085-94233 bp Gene: pfam01881:cas6 Type: other Location: 94235-94999 bp Gene: cd09693:cas5 Type: Type-I Location: 94990-95637 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 88882-89434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPO01000010.1 Clostridioides difficile strain 5502-NonSp/novelST 5502_contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 117018 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63998-71864 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 63998-65107 bp Gene: pfam01881:cas6 Type: other Location: 65366-66103 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 66108-67574 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 67594-68607 bp Gene: cd09693:cas5 Type: Type-I Location: 68623-69429 bp Gene: cd09641:cas3HD Type: Type-I Location: 69456-71864 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPO01000016.1 Clostridioides difficile strain 5502-NonSp/novelST 5502_contig000016, whole genome shotgun sequence

⇒Summary: seq-len = 85373 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32106-32402 bp Zoom in on locus 1 x5 CRISPR array Location: 32106-32402 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 32106-32402 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32106-32402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPO01000001.1 Clostridioides difficile strain 5502-NonSp/novelST 5502_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 984798 bp; # of CRISPR array = 5; # of cas gene = 11  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 161260-171593 bp 2 Locus 2: 279989-280283 bp 3 Locus 3: 323905-324065 bp 4 Locus 4: 477648-481663 bp 5 Locus 5: 559598-560350 bp 6 Locus 6: 797996-798222 bp Zoom in on locus 1 x20 Zoom in on locus 2 x5 Zoom in on locus 3 x3 Zoom in on locus 4 Zoom in on locus 5 x12 Zoom in on locus 6 x4 Gene: cd09652:cas6 Type: other Location: 161260-161955 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 161967-163706 bp Gene: pfam05107:cas7b Type: Type-I Location: 163699-164688 bp Gene: cd09693:cas5 Type: Type-I Location: 164690-165430 bp Gene: cd09641:cas3HD Type: Type-I Location: 165454-168012 bp CRISPR array Location: 168202-169481 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 168202-169481 bp Num of repeats: 20 Spacers: s1-s19 Gene: pfam01930:cas4 Type: Type-I Location: 169565-170059 bp Gene: cd09722:cas1 Type: universal Location: 170085-171092 bp Gene: cd09725:cas2 Type: universal Location: 171303-171593 bp CRISPR array Location: 279989-280283 bp Num of repeats: 5 Spacers: s20-s23 CRISPR array Location: 279989-280283 bp Num of repeats: 5 Spacers: s20-s23 CRISPR array Location: 323905-324065 bp Num of repeats: 3 Spacers: s24-s25 CRISPR array Location: 323905-324065 bp Num of repeats: 3 Spacers: s24-s25 Gene: cas14:cas14 Type: Type-V Location: 477648-478766 bp Gene: COG2378:WYL Type: other Location: 479405-480316 bp Gene: unk Type: unknown Location: 480427-480894 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 481064-481663 bp CRISPR array Location: 559598-560350 bp Num of repeats: 12 Spacers: s26-s36 CRISPR array Location: 559598-560350 bp Num of repeats: 12 Spacers: s26-s36 CRISPR array Location: 797996-798222 bp Num of repeats: 4 Spacers: s37-s39 CRISPR array Location: 797996-798222 bp Num of repeats: 4 Spacers: s37-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 168202-169481 bp]: array | spacers
           [Locus range 279989-280283 bp]: array | spacers
           [Locus range 323905-324065 bp]: array | spacers
           [Locus range 559598-560350 bp]: array | spacers
           [Locus range 797996-798222 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPO01000006.1 Clostridioides difficile strain 5502-NonSp/novelST 5502_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 137049 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108627-119468 bp Zoom in on locus 1 x20 CRISPR array Location: 108627-109903 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 108627-109903 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 110087-110353 bp Gene: cd09722:cas1 Type: universal Location: 110356-111336 bp Gene: pfam01930:cas4 Type: Type-I Location: 111339-111857 bp Gene: COG1203:cas3 Type: Type-I Location: 111905-114226 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 114237-114938 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 114940-115854 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 115856-117733 bp Gene: pfam01881:cas6 Type: other Location: 117739-118533 bp Gene: pfam13280:WYL Type: other Location: 118554-119468 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108627-109903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPO01000021.1 Clostridioides difficile strain 5502-NonSp/novelST 5502_contig000021, whole genome shotgun sequence

⇒Summary: seq-len = 69607 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46086-46311 bp Zoom in on locus 1 x4 CRISPR array Location: 46086-46311 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 46086-46311 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46086-46311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOPO01000019.1 Clostridioides difficile strain 5502-NonSp/novelST 5502_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 71842 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47284-48038 bp Zoom in on locus 1 x12 CRISPR array Location: 47284-48038 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 47284-48038 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47284-48038 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)