CRISPRone

CRISPRone report for GCA_002301305.1_ASM230130v1

♦ Seq 1: MOPZ01000152.1 Clostridioides difficile strain 5547-DH/ST42 5547_contig000156, whole genome shotgun sequence

⇒Summary: seq-len = 262905 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 205589-206734 bp 2 Locus 2: 257646-257806 bp Zoom in on locus 1 x18 Zoom in on locus 2 x3 CRISPR array Location: 205589-206734 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 205589-206734 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 257646-257806 bp Num of repeats: 3 Spacers: s18-s19 CRISPR array Location: 257646-257806 bp Num of repeats: 3 Spacers: s18-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 205589-206734 bp]: array | spacers
           [Locus range 257646-257806 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPZ01000142.1 Clostridioides difficile strain 5547-DH/ST42 5547_contig000146, whole genome shotgun sequence

⇒Summary: seq-len = 147513 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2924-3939 bp Zoom in on locus 1 x16 CRISPR array Location: 2924-3939 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 2924-3939 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2924-3939 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPZ01000147.1 Clostridioides difficile strain 5547-DH/ST42 5547_contig000151, whole genome shotgun sequence

⇒Summary: seq-len = 154582 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135681-136770 bp Zoom in on locus 1 x17 CRISPR array Location: 135681-136770 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 135681-136770 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135681-136770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPZ01000169.1 Clostridioides difficile strain 5547-DH/ST42 5547_contig000173, whole genome shotgun sequence

⇒Summary: seq-len = 485656 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp 2 Locus 2: 394408-394703 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers
           [Locus range 394408-394703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPZ01000279.1 Clostridioides difficile strain 5547-DH/ST42 5547_contig000289, whole genome shotgun sequence

⇒Summary: seq-len = 646980 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254173-265210 bp Zoom in on locus 1 x23 CRISPR array Location: 254173-255645 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 254173-255645 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 255829-256095 bp Gene: cd09722:cas1 Type: universal Location: 256098-257078 bp Gene: pfam01930:cas4 Type: Type-I Location: 257081-257599 bp Gene: COG1203:cas3 Type: Type-I Location: 257647-259968 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259979-260680 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260682-261596 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261598-263475 bp Gene: pfam01881:cas6 Type: other Location: 263481-264275 bp Gene: pfam13280:WYL Type: other Location: 264296-265210 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254173-255645 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPZ01000189.1 Clostridioides difficile strain 5547-DH/ST42 5547_contig000193, whole genome shotgun sequence

⇒Summary: seq-len = 352239 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp Zoom in on locus 1 x19 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOPZ01000202.1 Clostridioides difficile strain 5547-DH/ST42 5547_contig000206, whole genome shotgun sequence

⇒Summary: seq-len = 342645 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158795-166660 bp 2 Locus 2: 239928-240485 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 158795-161203 bp Gene: cd09693:cas5 Type: Type-I Location: 161230-162027 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162043-163056 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163076-164551 bp Gene: pfam01881:cas6 Type: other Location: 164556-165293 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165551-166660 bp CRISPR array Location: 239928-240485 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 239928-240485 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239928-240485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)