CRISPRone

CRISPRone report for GCA_002301325.1_ASM230132v1

♦ Seq 1: MOQG01000047.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000047, whole genome shotgun sequence

⇒Summary: seq-len = 30775 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23265-30773 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 23265-24374 bp Gene: pfam01881:cas6 Type: other Location: 24632-25369 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 25374-26849 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 26869-27882 bp Gene: cd09693:cas5 Type: Type-I Location: 27898-28695 bp Gene: cd09641:cas3HD Type: Type-I Location: 28722-30773 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQG01000130.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000129, whole genome shotgun sequence

⇒Summary: seq-len = 6672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5353-6437 bp Zoom in on locus 1 x17 CRISPR array Location: 5353-6437 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 5353-6437 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5353-6437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQG01000027.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000027, whole genome shotgun sequence

⇒Summary: seq-len = 43674 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23450-24856 bp Zoom in on locus 1 x22 CRISPR array Location: 23450-24856 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 23450-24856 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23450-24856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQG01000103.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000102, whole genome shotgun sequence

⇒Summary: seq-len = 12560 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2961-3788 bp Zoom in on locus 1 x13 CRISPR array Location: 2961-3788 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 2961-3788 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2961-3788 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQG01000090.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000089, whole genome shotgun sequence

⇒Summary: seq-len = 15553 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5679-5973 bp Zoom in on locus 1 x5 CRISPR array Location: 5679-5973 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5679-5973 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5679-5973 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQG01000119.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000118, whole genome shotgun sequence

⇒Summary: seq-len = 9187 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5068-6082 bp Zoom in on locus 1 x16 CRISPR array Location: 5068-6082 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 5068-6082 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5068-6082 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOQG01000126.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000125, whole genome shotgun sequence

⇒Summary: seq-len = 7269 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2082-2242 bp Zoom in on locus 1 x3 CRISPR array Location: 2082-2242 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2082-2242 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2082-2242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOQG01000042.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000042, whole genome shotgun sequence

⇒Summary: seq-len = 33672 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14967-26241 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 14967-15854 bp Gene: pfam01881:cas6 Type: other Location: 15932-16669 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 16675-18552 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 18554-19468 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 19470-20171 bp Gene: COG1203:cas3 Type: Type-I Location: 20182-22503 bp Gene: pfam01930:cas4 Type: Type-I Location: 22518-23069 bp Gene: cd09722:cas1 Type: universal Location: 23072-24052 bp Gene: cd09725:cas2 Type: universal Location: 24055-24321 bp CRISPR array Location: 24505-26241 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 24505-26241 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24505-26241 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOQG01000034.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000034, whole genome shotgun sequence

⇒Summary: seq-len = 37932 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27212-27570 bp Zoom in on locus 1 x6 CRISPR array Location: 27212-27570 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 27212-27570 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27212-27570 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOQG01000012.1 Clostridioides difficile strain 5555-DH/ST42 5555_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 58797 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4073-4630 bp Zoom in on locus 1 x9 CRISPR array Location: 4073-4630 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4073-4630 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4073-4630 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)