CRISPRone

CRISPRone report for GCA_002301335.1_ASM230133v1

♦ Seq 1: MOQH01000095.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000095, whole genome shotgun sequence

⇒Summary: seq-len = 71616 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3978-4535 bp Zoom in on locus 1 x9 CRISPR array Location: 3978-4535 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3978-4535 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3978-4535 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQH01000226.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000226, whole genome shotgun sequence

⇒Summary: seq-len = 32445 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7514-18551 bp Zoom in on locus 1 x23 CRISPR array Location: 7514-8986 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 7514-8986 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 9170-9436 bp Gene: cd09722:cas1 Type: universal Location: 9439-10419 bp Gene: pfam01930:cas4 Type: Type-I Location: 10422-10940 bp Gene: COG1203:cas3 Type: Type-I Location: 10988-13309 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 13320-14021 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 14023-14937 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14939-16816 bp Gene: pfam01881:cas6 Type: other Location: 16822-17616 bp Gene: pfam13280:WYL Type: other Location: 17637-18551 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7514-8986 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQH01000093.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000093, whole genome shotgun sequence

⇒Summary: seq-len = 67279 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31109-38974 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 31109-32218 bp Gene: pfam01881:cas6 Type: other Location: 32476-33213 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 33218-34693 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 34713-35726 bp Gene: cd09693:cas5 Type: Type-I Location: 35742-36539 bp Gene: cd09641:cas3HD Type: Type-I Location: 36566-38974 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQH01000232.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000232, whole genome shotgun sequence

⇒Summary: seq-len = 21807 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3157-4247 bp Zoom in on locus 1 x17 CRISPR array Location: 3157-4247 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3157-4247 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3157-4247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQH01000131.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000131, whole genome shotgun sequence

⇒Summary: seq-len = 20181 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 130-1345 bp Zoom in on locus 1 x19 CRISPR array Location: 130-1345 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 130-1345 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 130-1345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQH01000237.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000237, whole genome shotgun sequence

⇒Summary: seq-len = 4937 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1921-2081 bp Zoom in on locus 1 x3 CRISPR array Location: 1921-2081 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1921-2081 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1921-2081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOQH01000172.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000172, whole genome shotgun sequence

⇒Summary: seq-len = 28414 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5890-6184 bp Zoom in on locus 1 x5 CRISPR array Location: 5890-6184 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5890-6184 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5890-6184 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOQH01000130.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000130, whole genome shotgun sequence

⇒Summary: seq-len = 174332 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59545-59904 bp 2 Locus 2: 114430-114788 bp Zoom in on locus 1 x6 Zoom in on locus 2 x6 CRISPR array Location: 59545-59904 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 59545-59904 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 114430-114788 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 114430-114788 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59545-59904 bp]: array | spacers
           [Locus range 114430-114788 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOQH01000049.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000049, whole genome shotgun sequence

⇒Summary: seq-len = 20232 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16789-18196 bp Zoom in on locus 1 x22 CRISPR array Location: 16789-18196 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 16789-18196 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16789-18196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOQH01000058.1 Clostridioides difficile strain 5557-DH/ST42 5557_contig000058, whole genome shotgun sequence

⇒Summary: seq-len = 17876 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13882-14896 bp Zoom in on locus 1 x16 CRISPR array Location: 13882-14896 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 13882-14896 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13882-14896 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)