CRISPRone

CRISPRone report for GCA_002301375.1_ASM230137v1

♦ Seq 1: MOQJ01000007.1 Clostridioides difficile strain 5559-DH/ST42 5559_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 155804 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135681-136770 bp Zoom in on locus 1 x17 CRISPR array Location: 135681-136770 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 135681-136770 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135681-136770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQJ01000003.1 Clostridioides difficile strain 5559-DH/ST42 5559_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 489995 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190302-190661 bp 2 Locus 2: 398775-399070 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 190302-190661 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 190302-190661 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 398775-399070 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 398775-399070 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190302-190661 bp]: array | spacers
           [Locus range 398775-399070 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQJ01000002.1 Clostridioides difficile strain 5559-DH/ST42 5559_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 601592 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254137-265437 bp Zoom in on locus 1 x27 CRISPR array Location: 254137-255872 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 254137-255872 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 256056-256322 bp Gene: cd09722:cas1 Type: universal Location: 256325-257305 bp Gene: pfam01930:cas4 Type: Type-I Location: 257308-257826 bp Gene: COG1203:cas3 Type: Type-I Location: 257874-260195 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260206-260907 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260909-261823 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261825-263702 bp Gene: pfam01881:cas6 Type: other Location: 263708-264502 bp Gene: pfam13280:WYL Type: other Location: 264523-265437 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254137-255872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQJ01000001.1 Clostridioides difficile strain 5559-DH/ST42 5559_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1248371 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp 2 Locus 2: 357340-357499 bp 3 Locus 3: 408412-409818 bp 4 Locus 4: 758958-759972 bp 5 Locus 5: 921950-929815 bp 6 Locus 6: 1003083-1003640 bp Zoom in on locus 1 x19 Zoom in on locus 2 x3 Zoom in on locus 3 x22 Zoom in on locus 4 x16 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 357340-357499 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 357340-357499 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 408412-409818 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 408412-409818 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 758958-759972 bp Num of repeats: 16 Spacers: s42-s56 CRISPR array Location: 758958-759972 bp Num of repeats: 16 Spacers: s42-s56 Gene: cd09641:cas3HD Type: Type-I Location: 921950-924358 bp Gene: cd09693:cas5 Type: Type-I Location: 924385-925182 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 925198-926211 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 926231-927706 bp Gene: pfam01881:cas6 Type: other Location: 927711-928448 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 928706-929815 bp CRISPR array Location: 1003083-1003640 bp Num of repeats: 9 Spacers: s57-s64 CRISPR array Location: 1003083-1003640 bp Num of repeats: 9 Spacers: s57-s64 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers
           [Locus range 357340-357499 bp]: array | spacers
           [Locus range 408412-409818 bp]: array | spacers
           [Locus range 758958-759972 bp]: array | spacers
           [Locus range 1003083-1003640 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)