CRISPRone

CRISPRone report for GCA_002301435.1_ASM230143v1

♦ Seq 1: MOPW01000001.1 Clostridioides difficile strain 5541-CF/ST37 5541_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 242074 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59454-59549 bp Zoom in on locus 1 x2 CRISPR array Location: 59454-59549 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 59454-59549 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59454-59549 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPW01000030.1 Clostridioides difficile strain 5541-CF/ST37 5541_contig000030, whole genome shotgun sequence

⇒Summary: seq-len = 48261 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23284-23904 bp Zoom in on locus 1 x10 CRISPR array Location: 23284-23904 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 23284-23904 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23284-23904 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPW01000006.1 Clostridioides difficile strain 5541-CF/ST37 5541_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 146470 bp; # of CRISPR array = 0; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71153-80876 bp 2 Locus 2: 132086-143044 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 71153-72262 bp Gene: cas14:cas14 Type: Type-V Location: 72415-73587 bp Gene: unk Type: unknown Location: 73615-74073 bp Gene: pfam01881:cas6 Type: other Location: 74387-75124 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 75129-76595 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 76615-77628 bp Gene: cd09693:cas5 Type: Type-I Location: 77644-78441 bp Gene: cd09641:cas3HD Type: Type-I Location: 78468-80876 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 132086-132571 bp Gene: cd06127:DEDDh Type: Type-I Location: 139374-140420 bp Gene: unk Type: unknown Location: 140792-141298 bp Gene: unk Type: unknown Location: 141711-142379 bp Gene: cd06127:DEDDh Type: Type-I Location: 142538-143044 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPW01000042.1 Clostridioides difficile strain 5541-CF/ST37 5541_contig000042, whole genome shotgun sequence

⇒Summary: seq-len = 35353 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5952-6112 bp Zoom in on locus 1 x3 CRISPR array Location: 5952-6112 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5952-6112 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5952-6112 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPW01000029.1 Clostridioides difficile strain 5541-CF/ST37 5541_contig000029, whole genome shotgun sequence

⇒Summary: seq-len = 50751 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31268-31687 bp Zoom in on locus 1 x7 CRISPR array Location: 31268-31687 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 31268-31687 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31268-31687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPW01000013.1 Clostridioides difficile strain 5541-CF/ST37 5541_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 102071 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98015-98372 bp Zoom in on locus 1 x6 CRISPR array Location: 98015-98372 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 98015-98372 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98015-98372 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)