CRISPRone

CRISPRone report for GCA_002301555.1_ASM230155v1

♦ Seq 1: MOQD01000003.1 Clostridioides difficile strain 5551-CF/ST37 5551_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 284053 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164552-164971 bp Zoom in on locus 1 x7 CRISPR array Location: 164552-164971 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164552-164971 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164552-164971 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQD01000004.1 Clostridioides difficile strain 5551-CF/ST37 5551_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 265733 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 179934-180095 bp Zoom in on locus 1 x3 CRISPR array Location: 179934-180095 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 179934-180095 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 179934-180095 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQD01000001.1 Clostridioides difficile strain 5551-CF/ST37 5551_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 345329 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95461-106419 bp 2 Locus 2: 157629-167352 bp 3 Locus 3: 247139-247364 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95461-95967 bp Gene: unk Type: unknown Location: 96126-96794 bp Gene: unk Type: unknown Location: 97207-97713 bp Gene: cd06127:DEDDh Type: Type-I Location: 98085-99122 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105934-106419 bp Gene: cd09641:cas3HD Type: Type-I Location: 157629-160037 bp Gene: cd09693:cas5 Type: Type-I Location: 160064-160861 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160877-161890 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161910-163376 bp Gene: pfam01881:cas6 Type: other Location: 163381-164118 bp Gene: unk Type: unknown Location: 164432-164890 bp Gene: cas14:cas14 Type: Type-V Location: 164918-166090 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166243-167352 bp CRISPR array Location: 247139-247364 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247139-247364 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247139-247364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQD01000019.1 Clostridioides difficile strain 5551-CF/ST37 5551_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 81192 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11678-14732 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 11678-11838 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11678-11838 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14506-14732 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14506-14732 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11678-11838 bp]: array | spacers
           [Locus range 14506-14732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQD01000030.1 Clostridioides difficile strain 5551-CF/ST37 5551_contig000030, whole genome shotgun sequence

⇒Summary: seq-len = 32870 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8716-9335 bp Zoom in on locus 1 x10 CRISPR array Location: 8716-9335 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 8716-9335 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8716-9335 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQD01000008.1 Clostridioides difficile strain 5551-CF/ST37 5551_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 196323 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2047-2141 bp Zoom in on locus 1 x2 CRISPR array Location: 2047-2141 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2047-2141 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2047-2141 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)