CRISPRone

CRISPRone report for GCA_002301575.1_ASM230157v1

♦ Seq 1: MOQE01000100.1 Clostridioides difficile strain 5552-DH/ST42 5552_contig000107, whole genome shotgun sequence

⇒Summary: seq-len = 63965 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45064-46153 bp Zoom in on locus 1 x17 CRISPR array Location: 45064-46153 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 45064-46153 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45064-46153 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQE01000065.1 Clostridioides difficile strain 5552-DH/ST42 5552_contig000071, whole genome shotgun sequence

⇒Summary: seq-len = 34384 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29080-29240 bp Zoom in on locus 1 x3 CRISPR array Location: 29080-29240 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29080-29240 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29080-29240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQE01000107.1 Clostridioides difficile strain 5552-DH/ST42 5552_contig000114, whole genome shotgun sequence

⇒Summary: seq-len = 45872 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6403-7618 bp Zoom in on locus 1 x19 CRISPR array Location: 6403-7618 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 6403-7618 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6403-7618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQE01000078.1 Clostridioides difficile strain 5552-DH/ST42 5552_contig000084, whole genome shotgun sequence

⇒Summary: seq-len = 130962 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107771-109178 bp Zoom in on locus 1 x22 CRISPR array Location: 107771-109178 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 107771-109178 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107771-109178 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQE01000096.1 Clostridioides difficile strain 5552-DH/ST42 5552_contig000103, whole genome shotgun sequence

⇒Summary: seq-len = 485655 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp 2 Locus 2: 394408-394703 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers
           [Locus range 394408-394703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQE01000192.1 Clostridioides difficile strain 5552-DH/ST42 5552_contig000199, whole genome shotgun sequence

⇒Summary: seq-len = 102759 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14033-25307 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 14033-14920 bp Gene: pfam01881:cas6 Type: other Location: 14998-15735 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 15741-17618 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 17620-18534 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 18536-19237 bp Gene: COG1203:cas3 Type: Type-I Location: 19248-21569 bp Gene: pfam01930:cas4 Type: Type-I Location: 21584-22135 bp Gene: cd09722:cas1 Type: universal Location: 22138-23118 bp Gene: cd09725:cas2 Type: universal Location: 23121-23387 bp CRISPR array Location: 23571-25307 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 23571-25307 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23571-25307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOQE01000095.1 Clostridioides difficile strain 5552-DH/ST42 5552_contig000102, whole genome shotgun sequence

⇒Summary: seq-len = 383304 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69166-77031 bp 2 Locus 2: 238766-239781 bp Zoom in on locus 1 Zoom in on locus 2 x16 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69166-70275 bp Gene: pfam01881:cas6 Type: other Location: 70533-71270 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71275-72750 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72770-73783 bp Gene: cd09693:cas5 Type: Type-I Location: 73799-74596 bp Gene: cd09641:cas3HD Type: Type-I Location: 74623-77031 bp CRISPR array Location: 238766-239781 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 238766-239781 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 238766-239781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOQE01000155.1 Clostridioides difficile strain 5552-DH/ST42 5552_contig000162, whole genome shotgun sequence

⇒Summary: seq-len = 106907 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102121-102679 bp Zoom in on locus 1 x9 CRISPR array Location: 102121-102679 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 102121-102679 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102121-102679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)