CRISPRone

CRISPRone report for GCA_002301675.1_ASM230167v1

♦ Seq 1: MOQM01000011.1 Clostridioides difficile strain 5624-DH/ST42 5624_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 131661 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112760-113849 bp Zoom in on locus 1 x17 CRISPR array Location: 112760-113849 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112760-113849 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112760-113849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQM01000004.1 Clostridioides difficile strain 5624-DH/ST42 5624_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 485208 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244724-245282 bp 2 Locus 2: 318549-326414 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 244724-245282 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244724-245282 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318549-319658 bp Gene: pfam01881:cas6 Type: other Location: 319916-320653 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320658-322133 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322153-323166 bp Gene: cd09693:cas5 Type: Type-I Location: 323182-323979 bp Gene: cd09641:cas3HD Type: Type-I Location: 324006-326414 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244724-245282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQM01000003.1 Clostridioides difficile strain 5624-DH/ST42 5624_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 490003 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190310-190669 bp 2 Locus 2: 398783-399078 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 190310-190669 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 190310-190669 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 398783-399078 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 398783-399078 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190310-190669 bp]: array | spacers
           [Locus range 398783-399078 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQM01000001.1 Clostridioides difficile strain 5624-DH/ST42 5624_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 762895 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39471 bp 2 Locus 2: 357340-357499 bp 3 Locus 3: 408412-409818 bp 4 Locus 4: 758958-759972 bp Zoom in on locus 1 x19 Zoom in on locus 2 x3 Zoom in on locus 3 x22 Zoom in on locus 4 x16 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38255-39471 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 357340-357499 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 357340-357499 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 408412-409818 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 408412-409818 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 758958-759972 bp Num of repeats: 16 Spacers: s42-s56 CRISPR array Location: 758958-759972 bp Num of repeats: 16 Spacers: s42-s56 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39471 bp]: array | spacers
           [Locus range 357340-357499 bp]: array | spacers
           [Locus range 408412-409818 bp]: array | spacers
           [Locus range 758958-759972 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQM01000002.1 Clostridioides difficile strain 5624-DH/ST42 5624_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 509184 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 243775-255049 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 243775-244662 bp Gene: pfam01881:cas6 Type: other Location: 244740-245477 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 245483-247360 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247362-248276 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 248278-248979 bp Gene: COG1203:cas3 Type: Type-I Location: 248990-251311 bp Gene: pfam01930:cas4 Type: Type-I Location: 251326-251877 bp Gene: cd09722:cas1 Type: universal Location: 251880-252860 bp Gene: cd09725:cas2 Type: universal Location: 252863-253129 bp CRISPR array Location: 253313-255049 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 253313-255049 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253313-255049 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)