CRISPRone

CRISPRone report for GCA_002301695.1_ASM230169v1

♦ Seq 1: MOPU01000001.1 Clostridioides difficile strain 5538-BK/ST11 5538_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 342401 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45958-46772 bp 2 Locus 2: 102184-114495 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 45958-46772 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45958-46772 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 102184-102561 bp Gene: cd09718:cas1 Type: universal Location: 102573-104228 bp CRISPR array Location: 111630-114495 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 111630-114495 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45958-46772 bp]: array | spacers
           [Locus range 111630-114495 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOPU01000010.1 Clostridioides difficile strain 5538-BK/ST11 5538_contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 148767 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10829-22528 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 10829-11782 bp Gene: pfam01881:cas6 Type: other Location: 11860-12597 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 12603-14453 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 14455-15369 bp Gene: cd09693:cas5 Type: Type-I Location: 15371-16072 bp Gene: COG1203:cas3 Type: Type-I Location: 16083-18404 bp Gene: pfam01930:cas4 Type: Type-I Location: 18419-18970 bp Gene: cd09722:cas1 Type: universal Location: 18973-19953 bp Gene: cd09725:cas2 Type: universal Location: 19956-20222 bp CRISPR array Location: 20406-22528 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 20406-22528 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20406-22528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOPU01000005.1 Clostridioides difficile strain 5538-BK/ST11 5538_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 259089 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97983-108936 bp 2 Locus 2: 161539-169866 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97983-98489 bp Gene: unk Type: unknown Location: 98648-99316 bp Gene: unk Type: unknown Location: 99729-100235 bp Gene: cd06127:DEDDh Type: Type-I Location: 100599-101636 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108451-108936 bp Gene: cd09641:cas3HD Type: Type-I Location: 161539-163947 bp Gene: cd09693:cas5 Type: Type-I Location: 163974-164771 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164787-165800 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165819-167285 bp Gene: pfam01881:cas6 Type: other Location: 167290-168027 bp Gene: unk Type: unknown Location: 168128-168304 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168757-169866 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOPU01000020.1 Clostridioides difficile strain 5538-BK/ST11 5538_contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 77430 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2407-3556 bp Zoom in on locus 1 x18 CRISPR array Location: 2407-3556 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 2407-3556 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2407-3556 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOPU01000012.1 Clostridioides difficile strain 5538-BK/ST11 5538_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 141252 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61786-73307 bp Zoom in on locus 1 x38 Gene: cd09725:cas2 Type: universal Location: 61786-62076 bp Gene: cd09722:cas1 Type: universal Location: 62287-63294 bp Gene: pfam01930:cas4 Type: Type-I Location: 63320-63814 bp CRISPR array Location: 63899-66365 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 63899-66365 bp Num of repeats: 38 Spacers: s1-s37 Gene: unk Type: unknown Location: 63996-64163 bp Gene: unk Type: unknown Location: 64456-64584 bp Gene: cd09641:cas3HD Type: Type-I Location: 66555-69113 bp Gene: cd09693:cas5 Type: Type-I Location: 69137-69877 bp Gene: pfam05107:cas7b Type: Type-I Location: 69879-70868 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70861-72600 bp Gene: cd09652:cas6 Type: other Location: 72612-73307 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63899-66365 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOPU01000002.1 Clostridioides difficile strain 5538-BK/ST11 5538_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295463 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104112-104738 bp Zoom in on locus 1 x10 CRISPR array Location: 104112-104738 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104112-104738 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104112-104738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)