CRISPRone

CRISPRone report for GCA_002301715.1_ASM230171v1

♦ Seq 1: MOQN01000124.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000124, whole genome shotgun sequence

⇒Summary: seq-len = 9360 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6546-6967 bp Zoom in on locus 1 x7 CRISPR array Location: 6546-6967 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 6546-6967 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6546-6967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQN01000166.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000166, whole genome shotgun sequence

⇒Summary: seq-len = 3490 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1951-2112 bp Zoom in on locus 1 x3 CRISPR array Location: 1951-2112 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1951-2112 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1951-2112 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQN01000010.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 63760 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23262-31137 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 23262-24371 bp Gene: pfam01881:cas6 Type: other Location: 24630-25367 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 25372-26847 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 26867-27880 bp Gene: cd09693:cas5 Type: Type-I Location: 27896-28702 bp Gene: cd09641:cas3HD Type: Type-I Location: 28729-31137 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQN01000008.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 69401 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12676-13428 bp 2 Locus 2: 47995-54093 bp Zoom in on locus 1 x12 Zoom in on locus 2 x6 x4 x3 x8 CRISPR array Location: 12676-13428 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 12676-13428 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 47995-48352 bp Num of repeats: 6 Spacers: s12-s16 CRISPR array Location: 47995-48352 bp Num of repeats: 6 Spacers: s12-s16 CRISPR array Location: 51185-51411 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 51185-51411 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 51645-51806 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 51645-51806 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 53605-54093 bp Num of repeats: 8 Spacers: s22-s28 CRISPR array Location: 53605-54093 bp Num of repeats: 8 Spacers: s22-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12676-13428 bp]: array | spacers
           [Locus range 47995-48352 bp]: array | spacers
           [Locus range 51185-51411 bp]: array | spacers
           [Locus range 51645-51806 bp]: array | spacers
           [Locus range 53605-54093 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQN01000203.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000202, whole genome shotgun sequence

⇒Summary: seq-len = 1277 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 261-1284 bp Zoom in on locus 1 x16 CRISPR array Location: 261-1284 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 261-1284 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 261-1284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQN01000068.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000068, whole genome shotgun sequence

⇒Summary: seq-len = 20475 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11555-20473 bp Zoom in on locus 1 x29 CRISPR array Location: 11555-13432 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 11555-13432 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09725:cas2 Type: universal Location: 13616-13882 bp Gene: cd09722:cas1 Type: universal Location: 13885-14865 bp Gene: pfam01930:cas4 Type: Type-I Location: 14868-15386 bp Gene: COG1203:cas3 Type: Type-I Location: 15434-17755 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 17766-18467 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 18469-19383 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 19385-20473 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11555-13432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOQN01000108.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000108, whole genome shotgun sequence

⇒Summary: seq-len = 11582 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9181-9275 bp Zoom in on locus 1 x2 CRISPR array Location: 9181-9275 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 9181-9275 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9181-9275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOQN01000011.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 62182 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36144-36369 bp Zoom in on locus 1 x4 CRISPR array Location: 36144-36369 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 36144-36369 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36144-36369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOQN01000027.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000027, whole genome shotgun sequence

⇒Summary: seq-len = 42677 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34975-35666 bp Zoom in on locus 1 x11 CRISPR array Location: 34975-35666 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 34975-35666 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34975-35666 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOQN01000055.1 Clostridioides difficile strain 6583-AH/ST67 6583_contig000055, whole genome shotgun sequence

⇒Summary: seq-len = 26261 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21253-21746 bp Zoom in on locus 1 x8 CRISPR array Location: 21253-21746 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 21253-21746 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21253-21746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)