CRISPRone

CRISPRone report for GCA_002301735.1_ASM230173v1

♦ Seq 1: MOQO01000036.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000036, whole genome shotgun sequence

⇒Summary: seq-len = 37332 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27927-29008 bp Zoom in on locus 1 x17 CRISPR array Location: 27927-29008 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 27927-29008 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27927-29008 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQO01000007.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 158351 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28882-30531 bp Zoom in on locus 1 x3 x14 CRISPR array Location: 28882-29043 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28882-29043 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29645-30531 bp Num of repeats: 14 Spacers: s3-s15 CRISPR array Location: 29645-30531 bp Num of repeats: 14 Spacers: s3-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28882-29043 bp]: array | spacers
           [Locus range 29645-30531 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQO01000030.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000030, whole genome shotgun sequence

⇒Summary: seq-len = 51798 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45080-45637 bp Zoom in on locus 1 x9 CRISPR array Location: 45080-45637 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 45080-45637 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45080-45637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQO01000003.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 267076 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29125-29484 bp 2 Locus 2: 102753-110618 bp Zoom in on locus 1 x6 Zoom in on locus 2 CRISPR array Location: 29125-29484 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 29125-29484 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 102753-103862 bp Gene: pfam01881:cas6 Type: other Location: 104120-104857 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 104862-106337 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 106357-107370 bp Gene: cd09693:cas5 Type: Type-I Location: 107386-108183 bp Gene: cd09641:cas3HD Type: Type-I Location: 108210-110618 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29125-29484 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQO01000019.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 84658 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61762-72944 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 61762-62649 bp Gene: pfam01881:cas6 Type: other Location: 62727-63464 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 63470-65320 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 65322-66236 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 66238-66939 bp Gene: COG1203:cas3 Type: Type-I Location: 66950-69271 bp Gene: pfam01930:cas4 Type: Type-I Location: 69286-69837 bp Gene: cd09722:cas1 Type: universal Location: 69840-70820 bp Gene: cd09725:cas2 Type: universal Location: 70823-71089 bp CRISPR array Location: 71273-72944 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 71273-72944 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 71273-72944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQO01000022.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000022, whole genome shotgun sequence

⇒Summary: seq-len = 81693 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61099-62837 bp Zoom in on locus 1 x27 CRISPR array Location: 61099-62837 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 61099-62837 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61099-62837 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOQO01000014.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000014, whole genome shotgun sequence

⇒Summary: seq-len = 97678 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5586-5811 bp 2 Locus 2: 51482-52891 bp Zoom in on locus 1 x4 Zoom in on locus 2 x22 CRISPR array Location: 5586-5811 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5586-5811 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 51482-52891 bp Num of repeats: 22 Spacers: s4-s24 CRISPR array Location: 51482-52891 bp Num of repeats: 22 Spacers: s4-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5586-5811 bp]: array | spacers
           [Locus range 51482-52891 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOQO01000002.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 271935 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59415-60035 bp 2 Locus 2: 265639-265995 bp Zoom in on locus 1 x10 Zoom in on locus 2 x6 CRISPR array Location: 59415-60035 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 59415-60035 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 265639-265995 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 265639-265995 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59415-60035 bp]: array | spacers
           [Locus range 265639-265995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOQO01000045.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000045, whole genome shotgun sequence

⇒Summary: seq-len = 21762 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45-5681 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 45-2027 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2038-3108 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3129-4277 bp Gene: pfam01881:cas6 Type: other Location: 4279-5043 bp Gene: cd09693:cas5 Type: Type-I Location: 5034-5681 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOQO01000027.1 Clostridioides difficile strain 6584-AQ/ST26 6584_contig000027, whole genome shotgun sequence

⇒Summary: seq-len = 61090 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 372-728 bp Zoom in on locus 1 x6 CRISPR array Location: 372-728 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 372-728 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 372-728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)