CRISPRone

CRISPRone report for GCA_002301855.1_ASM230185v1

♦ Seq 1: MOQV01000168.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000167, whole genome shotgun sequence

⇒Summary: seq-len = 3683 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1365-1720 bp Zoom in on locus 1 x6 CRISPR array Location: 1365-1720 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1365-1720 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1365-1720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQV01000127.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000126, whole genome shotgun sequence

⇒Summary: seq-len = 9113 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5249-6134 bp Zoom in on locus 1 x14 CRISPR array Location: 5249-6134 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 5249-6134 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5249-6134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQV01000133.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000132, whole genome shotgun sequence

⇒Summary: seq-len = 7516 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3316-4136 bp Zoom in on locus 1 x13 CRISPR array Location: 3316-4136 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3316-4136 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3316-4136 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQV01000167.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000166, whole genome shotgun sequence

⇒Summary: seq-len = 3734 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3012-3503 bp Zoom in on locus 1 x8 CRISPR array Location: 3012-3503 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3012-3503 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3012-3503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQV01000022.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000021, whole genome shotgun sequence

⇒Summary: seq-len = 54173 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38319-45600 bp Zoom in on locus 1 x17 CRISPR array Location: 38319-39397 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 38319-39397 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 39964-41946 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 41957-43027 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 43048-44196 bp Gene: pfam01881:cas6 Type: other Location: 44198-44962 bp Gene: cd09693:cas5 Type: Type-I Location: 44953-45600 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38319-39397 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQV01000062.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000061, whole genome shotgun sequence

⇒Summary: seq-len = 23032 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2824-4300 bp Zoom in on locus 1 x23 CRISPR array Location: 2824-4300 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 2824-4300 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2824-4300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOQV01000019.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 54670 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14080-23977 bp Zoom in on locus 1 x6 Gene: pfam13280:WYL Type: other Location: 14080-14967 bp Gene: pfam01881:cas6 Type: other Location: 15045-15782 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 15788-17665 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 17667-18581 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 18583-19284 bp Gene: COG1203:cas3 Type: Type-I Location: 19295-21616 bp Gene: pfam01930:cas4 Type: Type-I Location: 21631-22182 bp Gene: cd09722:cas1 Type: universal Location: 22185-23165 bp Gene: cd09725:cas2 Type: universal Location: 23168-23434 bp CRISPR array Location: 23618-23977 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 23618-23977 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23618-23977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOQV01000108.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000107, whole genome shotgun sequence

⇒Summary: seq-len = 12597 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 570-1932 bp Zoom in on locus 1 x3 x8 CRISPR array Location: 570-731 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 570-731 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1440-1932 bp Num of repeats: 8 Spacers: s3-s9 CRISPR array Location: 1440-1932 bp Num of repeats: 8 Spacers: s3-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 570-731 bp]: array | spacers
           [Locus range 1440-1932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOQV01000020.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 54615 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6022-6248 bp Zoom in on locus 1 x4 CRISPR array Location: 6022-6248 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6022-6248 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6022-6248 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOQV01000003.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 105695 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37842-45165 bp Zoom in on locus 1 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 37842-38498 bp Gene: pfam01881:cas6 Type: other Location: 38676-39413 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 39418-40884 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 40904-41917 bp Gene: cd09693:cas5 Type: Type-I Location: 41933-42730 bp Gene: cd09641:cas3HD Type: Type-I Location: 42757-45165 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: MOQV01000068.1 Clostridioides difficile strain 6596-D/ST9 6596_contig000067, whole genome shotgun sequence

⇒Summary: seq-len = 21312 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17310-17405 bp Zoom in on locus 1 x2 CRISPR array Location: 17310-17405 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17310-17405 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17310-17405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)