CRISPRone

CRISPRone report for GCA_002301895.1_ASM230189v1

♦ Seq 1: MOQU01000002.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 33671 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10130-13835 bp Zoom in on locus 1 x9 x7 CRISPR array Location: 10130-10686 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10130-10686 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 13416-13835 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 13416-13835 bp Num of repeats: 7 Spacers: s9-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10130-10686 bp]: array | spacers
           [Locus range 13416-13835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQU01000189.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000189, whole genome shotgun sequence

⇒Summary: seq-len = 6714 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2456-3276 bp Zoom in on locus 1 x13 CRISPR array Location: 2456-3276 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 2456-3276 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2456-3276 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQU01000364.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000364, whole genome shotgun sequence

⇒Summary: seq-len = 3970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2237-2595 bp Zoom in on locus 1 x6 CRISPR array Location: 2237-2595 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2237-2595 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2237-2595 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQU01000124.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000124, whole genome shotgun sequence

⇒Summary: seq-len = 8763 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2202-2691 bp Zoom in on locus 1 x8 CRISPR array Location: 2202-2691 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2202-2691 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2202-2691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQU01000069.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000069, whole genome shotgun sequence

⇒Summary: seq-len = 11421 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59-1333 bp Zoom in on locus 1 x20 CRISPR array Location: 59-1333 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 59-1333 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59-1333 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQU01000098.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000098, whole genome shotgun sequence

⇒Summary: seq-len = 9832 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 670-1087 bp Zoom in on locus 1 x7 CRISPR array Location: 670-1087 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 670-1087 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 670-1087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOQU01000360.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000360, whole genome shotgun sequence

⇒Summary: seq-len = 4047 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74-1087 bp Zoom in on locus 1 x16 CRISPR array Location: 74-1087 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 74-1087 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74-1087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MOQU01000035.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000035, whole genome shotgun sequence

⇒Summary: seq-len = 14218 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3914-4007 bp Zoom in on locus 1 x2 CRISPR array Location: 3914-4007 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3914-4007 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3914-4007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MOQU01000071.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000071, whole genome shotgun sequence

⇒Summary: seq-len = 11332 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-9580 bp Zoom in on locus 1 x11 Gene: pfam13280:WYL Type: other Location: 3-269 bp Gene: pfam01881:cas6 Type: other Location: 347-1084 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1090-2940 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2942-3856 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3858-4559 bp Gene: COG1203:cas3 Type: Type-I Location: 4570-6891 bp Gene: pfam01930:cas4 Type: Type-I Location: 6906-7457 bp Gene: cd09722:cas1 Type: universal Location: 7460-8440 bp Gene: cd09725:cas2 Type: universal Location: 8443-8709 bp CRISPR array Location: 8893-9580 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 8893-9580 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8893-9580 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MOQU01000310.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000310, whole genome shotgun sequence

⇒Summary: seq-len = 4709 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-4674 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 3-593 bp Gene: cd09693:cas5 Type: Type-I Location: 620-1417 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1433-2446 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2466-3932 bp Gene: pfam01881:cas6 Type: other Location: 3937-4674 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: MOQU01000540.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000540, whole genome shotgun sequence

⇒Summary: seq-len = 2153 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 443-1594 bp Zoom in on locus 1 x18 CRISPR array Location: 443-1594 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 443-1594 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 443-1594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: MOQU01000143.1 Clostridioides difficile strain 6597-AL/ST58 6597_contig000143, whole genome shotgun sequence

⇒Summary: seq-len = 8271 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5494-5654 bp Zoom in on locus 1 x3 CRISPR array Location: 5494-5654 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5494-5654 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5494-5654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)