CRISPRone

CRISPRone report for GCA_002301925.1_ASM230192v1

♦ Seq 1: MOQS01000012.1 Clostridioides difficile strain 6600-G/ST8 6600_contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 124391 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4213-16269 bp Zoom in on locus 1 x46 Gene: cd09652:cas6 Type: other Location: 4213-4908 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 4920-6659 bp Gene: pfam05107:cas7b Type: Type-I Location: 6652-7641 bp Gene: cd09693:cas5 Type: Type-I Location: 7643-8383 bp Gene: cd09641:cas3HD Type: Type-I Location: 8407-10965 bp CRISPR array Location: 11155-14157 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 11155-14157 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 14241-14735 bp Gene: cd09722:cas1 Type: universal Location: 14761-15768 bp Gene: cd09725:cas2 Type: universal Location: 15979-16269 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11155-14157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MOQS01000008.1 Clostridioides difficile strain 6600-G/ST8 6600_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 153732 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135643-135869 bp Zoom in on locus 1 x4 CRISPR array Location: 135643-135869 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135643-135869 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135643-135869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MOQS01000018.1 Clostridioides difficile strain 6600-G/ST8 6600_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 89905 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86175-86925 bp Zoom in on locus 1 x12 CRISPR array Location: 86175-86925 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 86175-86925 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86175-86925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MOQS01000005.1 Clostridioides difficile strain 6600-G/ST8 6600_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 254690 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20024-20186 bp Zoom in on locus 1 x3 CRISPR array Location: 20024-20186 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 20024-20186 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20024-20186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MOQS01000001.1 Clostridioides difficile strain 6600-G/ST8 6600_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 487674 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 187773-188066 bp 2 Locus 2: 396208-396629 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 CRISPR array Location: 187773-188066 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 187773-188066 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 396208-396629 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 396208-396629 bp Num of repeats: 7 Spacers: s5-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 187773-188066 bp]: array | spacers
           [Locus range 396208-396629 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MOQS01000002.1 Clostridioides difficile strain 6600-G/ST8 6600_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 462637 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135957-143822 bp 2 Locus 2: 217070-217627 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 135957-138365 bp Gene: cd09693:cas5 Type: Type-I Location: 138392-139189 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139205-140218 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140238-141713 bp Gene: pfam01881:cas6 Type: other Location: 141718-142455 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 142713-143822 bp CRISPR array Location: 217070-217627 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 217070-217627 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 217070-217627 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MOQS01000015.1 Clostridioides difficile strain 6600-G/ST8 6600_contig000015, whole genome shotgun sequence

⇒Summary: seq-len = 91643 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53030-53390 bp Zoom in on locus 1 x6 CRISPR array Location: 53030-53390 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 53030-53390 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53030-53390 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)