CRISPRone

CRISPRone report for GCA_002301955.1_ASM230195v1

♦ Seq 1: MPEQ01000067.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000067, whole genome shotgun sequence

⇒Summary: seq-len = 11225 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5374-6060 bp Zoom in on locus 1 x11 CRISPR array Location: 5374-6060 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 5374-6060 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5374-6060 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPEQ01000011.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 128492 bp; # of CRISPR array = 0; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53745-61622 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 53745-55550 bp Gene: unk Type: unknown Location: 56273-56482 bp Gene: pfam00078:RT Type: other Location: 56637-57356 bp Gene: pfam00078:RT Type: other Location: 57401-58522 bp Gene: unk Type: unknown Location: 58553-58774 bp Gene: unk Type: unknown Location: 58960-59223 bp Gene: pfam00078:RT Type: other Location: 59811-61622 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPEQ01000005.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 156485 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 152172-154044 bp Zoom in on locus 1 x29 CRISPR array Location: 152172-154044 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 152172-154044 bp Num of repeats: 29 Spacers: s1-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 152172-154044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPEQ01000013.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 92490 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5882-6238 bp Zoom in on locus 1 x6 CRISPR array Location: 5882-6238 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5882-6238 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5882-6238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPEQ01000015.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000015, whole genome shotgun sequence

⇒Summary: seq-len = 86955 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73491-74044 bp Zoom in on locus 1 x9 CRISPR array Location: 73491-74044 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 73491-74044 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73491-74044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPEQ01000030.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000030, whole genome shotgun sequence

⇒Summary: seq-len = 58349 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56617-57826 bp Zoom in on locus 1 x19 CRISPR array Location: 56617-57826 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 56617-57826 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56617-57826 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPEQ01000001.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 281726 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 216204-226586 bp Zoom in on locus 1 x13 CRISPR array Location: 216204-217023 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 216204-217023 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09725:cas2 Type: universal Location: 217207-217473 bp Gene: cd09722:cas1 Type: universal Location: 217476-218456 bp Gene: pfam01930:cas4 Type: Type-I Location: 218459-218977 bp Gene: COG1203:cas3 Type: Type-I Location: 219025-221346 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 221357-222058 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 222060-222974 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 222976-224853 bp Gene: pfam01881:cas6 Type: other Location: 224859-225653 bp Gene: pfam13280:WYL Type: other Location: 225674-225814 bp Gene: pfam13280:WYL Type: other Location: 225966-226586 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 216204-217023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MPEQ01000046.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000046, whole genome shotgun sequence

⇒Summary: seq-len = 36135 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6282-7427 bp Zoom in on locus 1 x18 CRISPR array Location: 6282-7427 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 6282-7427 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6282-7427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MPEQ01000002.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 247229 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59555-67411 bp 2 Locus 2: 140683-141507 bp Zoom in on locus 1 Zoom in on locus 2 x13 Gene: cd09641:cas3HD Type: Type-I Location: 59555-61963 bp Gene: cd09693:cas5 Type: Type-I Location: 61990-62787 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 62803-63816 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 63836-65302 bp Gene: pfam01881:cas6 Type: other Location: 65307-65984 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 66302-67411 bp CRISPR array Location: 140683-141507 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 140683-141507 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 140683-141507 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MPEQ01000003.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 201642 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3373-11072 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 3373-4059 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 4133-5812 bp Gene: pfam05107:cas7b Type: Type-I Location: 5927-6904 bp Gene: cd09693:cas5 Type: Type-I Location: 6907-7659 bp Gene: unk Type: unknown Location: 7709-8116 bp Gene: unk Type: unknown Location: 8303-8476 bp Gene: cd09641:cas3HD Type: Type-I Location: 8547-11072 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: MPEQ01000056.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000056, whole genome shotgun sequence

⇒Summary: seq-len = 23238 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53-5689 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 53-2035 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2046-3116 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3137-4285 bp Gene: pfam01881:cas6 Type: other Location: 4287-5051 bp Gene: cd09693:cas5 Type: Type-I Location: 5042-5689 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: MPEQ01000043.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000043, whole genome shotgun sequence

⇒Summary: seq-len = 37258 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12019-12964 bp Zoom in on locus 1 x15 CRISPR array Location: 12019-12964 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 12019-12964 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12019-12964 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: MPEQ01000008.1 Clostridioides difficile strain 6636-R/ST48 LCH6636_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 134332 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 131656-131951 bp Zoom in on locus 1 x5 CRISPR array Location: 131656-131951 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 131656-131951 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 131656-131951 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)