CRISPRone

CRISPRone report for GCA_002301975.1_ASM230197v1

♦ Seq 1: MPER01000001.1 Clostridioides difficile strain 6637-AL/ST58 LCH6637_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 463825 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171487-172307 bp 2 Locus 2: 335704-344013 bp 3 Locus 3: 417293-417386 bp Zoom in on locus 1 x13 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 171487-172307 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 171487-172307 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09641:cas3HD Type: Type-I Location: 335704-338112 bp Gene: cd09693:cas5 Type: Type-I Location: 338139-338936 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 338952-339965 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 339985-341451 bp Gene: pfam01881:cas6 Type: other Location: 341456-342193 bp Gene: unk Type: unknown Location: 342294-342470 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 342904-344013 bp CRISPR array Location: 417293-417386 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 417293-417386 bp Num of repeats: 2 Spacers: s13-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 171487-172307 bp]: array | spacers
           [Locus range 417293-417386 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPER01000005.1 Clostridioides difficile strain 6637-AL/ST58 LCH6637_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 210024 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118262-119083 bp Zoom in on locus 1 x13 CRISPR array Location: 118262-119083 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 118262-119083 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118262-119083 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPER01000019.1 Clostridioides difficile strain 6637-AL/ST58 LCH6637_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 97487 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78143-79222 bp Zoom in on locus 1 x17 CRISPR array Location: 78143-79222 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 78143-79222 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78143-79222 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPER01000011.1 Clostridioides difficile strain 6637-AL/ST58 LCH6637_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 154849 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138633-139051 bp Zoom in on locus 1 x7 CRISPR array Location: 138633-139051 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 138633-139051 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138633-139051 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPER01000008.1 Clostridioides difficile strain 6637-AL/ST58 LCH6637_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 173928 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59997-61336 bp Zoom in on locus 1 x21 CRISPR array Location: 59997-61336 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 59997-61336 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59997-61336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPER01000003.1 Clostridioides difficile strain 6637-AL/ST58 LCH6637_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 309013 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 151675-161899 bp Zoom in on locus 1 x11 CRISPR array Location: 151675-152361 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 151675-152361 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 152545-152811 bp Gene: cd09722:cas1 Type: universal Location: 152814-153794 bp Gene: pfam01930:cas4 Type: Type-I Location: 153797-154315 bp Gene: COG1203:cas3 Type: Type-I Location: 154363-156684 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 156695-157396 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157398-158312 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 158314-160164 bp Gene: pfam01881:cas6 Type: other Location: 160170-160964 bp Gene: pfam13280:WYL Type: other Location: 160985-161899 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 151675-152361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPER01000036.1 Clostridioides difficile strain 6637-AL/ST58 LCH6637_contig000036, whole genome shotgun sequence

⇒Summary: seq-len = 7324 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2068-2229 bp Zoom in on locus 1 x3 CRISPR array Location: 2068-2229 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2068-2229 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2068-2229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MPER01000009.1 Clostridioides difficile strain 6637-AL/ST58 LCH6637_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 167447 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107960-108978 bp 2 Locus 2: 154657-155016 bp Zoom in on locus 1 x16 Zoom in on locus 2 x6 CRISPR array Location: 107960-108978 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 107960-108978 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 154657-155016 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 154657-155016 bp Num of repeats: 6 Spacers: s16-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107960-108978 bp]: array | spacers
           [Locus range 154657-155016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)