CRISPRone

CRISPRone report for GCA_002302005.1_ASM230200v1

♦ Seq 1: MPES01000003.1 Clostridioides difficile strain 7450-DH/ST42 7450_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 485628 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185935-186294 bp 2 Locus 2: 394408-394703 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185935-186294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 394408-394703 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185935-186294 bp]: array | spacers
           [Locus range 394408-394703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPES01000001.1 Clostridioides difficile strain 7450-DH/ST42 7450_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 781667 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254119-265354 bp Zoom in on locus 1 x26 CRISPR array Location: 254119-255789 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 254119-255789 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 255973-256239 bp Gene: cd09722:cas1 Type: universal Location: 256242-257222 bp Gene: pfam01930:cas4 Type: Type-I Location: 257225-257743 bp Gene: COG1203:cas3 Type: Type-I Location: 257791-260112 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260123-260824 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260826-261740 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261742-263619 bp Gene: pfam01881:cas6 Type: other Location: 263625-264419 bp Gene: pfam13280:WYL Type: other Location: 264440-265354 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254119-255789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPES01000006.1 Clostridioides difficile strain 7450-DH/ST42 7450_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 250110 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-39405 bp Zoom in on locus 1 x18 CRISPR array Location: 38255-39405 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 38255-39405 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38255-39405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPES01000002.1 Clostridioides difficile strain 7450-DH/ST42 7450_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 502580 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97484-97643 bp 2 Locus 2: 148556-149503 bp 3 Locus 3: 498643-499657 bp Zoom in on locus 1 x3 Zoom in on locus 2 x15 Zoom in on locus 3 x16 CRISPR array Location: 97484-97643 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 97484-97643 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 148556-149503 bp Num of repeats: 15 Spacers: s3-s16 CRISPR array Location: 148556-149503 bp Num of repeats: 15 Spacers: s3-s16 CRISPR array Location: 498643-499657 bp Num of repeats: 16 Spacers: s17-s31 CRISPR array Location: 498643-499657 bp Num of repeats: 16 Spacers: s17-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97484-97643 bp]: array | spacers
           [Locus range 148556-149503 bp]: array | spacers
           [Locus range 498643-499657 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPES01000008.1 Clostridioides difficile strain 7450-DH/ST42 7450_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 153928 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135557-136116 bp Zoom in on locus 1 x9 CRISPR array Location: 135557-136116 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 135557-136116 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135557-136116 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPES01000004.1 Clostridioides difficile strain 7450-DH/ST42 7450_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 485208 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158795-166660 bp 2 Locus 2: 239928-240485 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 158795-161203 bp Gene: cd09693:cas5 Type: Type-I Location: 161230-162027 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162043-163056 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163076-164551 bp Gene: pfam01881:cas6 Type: other Location: 164556-165293 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165551-166660 bp CRISPR array Location: 239928-240485 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 239928-240485 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239928-240485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)