CRISPRone

CRISPRone report for GCA_002302055.1_ASM230205v1

♦ Seq 1: MPET01000031.1 Clostridioides difficile strain 7451-NonSp/ST2 LCH7451_contig000031, whole genome shotgun sequence

⇒Summary: seq-len = 11340 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6289-7438 bp Zoom in on locus 1 x18 CRISPR array Location: 6289-7438 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 6289-7438 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6289-7438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPET01000003.1 Clostridioides difficile strain 7451-NonSp/ST2 LCH7451_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 318808 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54980-65959 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 54980-55867 bp Gene: pfam01881:cas6 Type: other Location: 55945-56682 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 56688-58538 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 58540-59454 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 59456-60157 bp Gene: COG1203:cas3 Type: Type-I Location: 60168-62489 bp Gene: pfam01930:cas4 Type: Type-I Location: 62504-63055 bp Gene: cd09722:cas1 Type: universal Location: 63058-64038 bp Gene: cd09725:cas2 Type: universal Location: 64041-64307 bp CRISPR array Location: 64491-65959 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 64491-65959 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64491-65959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPET01000008.1 Clostridioides difficile strain 7451-NonSp/ST2 LCH7451_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 191887 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172321-173077 bp Zoom in on locus 1 x12 CRISPR array Location: 172321-173077 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 172321-173077 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 172321-173077 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPET01000006.1 Clostridioides difficile strain 7451-NonSp/ST2 LCH7451_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 218342 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126327-126487 bp Zoom in on locus 1 x3 CRISPR array Location: 126327-126487 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 126327-126487 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 126327-126487 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPET01000002.1 Clostridioides difficile strain 7451-NonSp/ST2 LCH7451_contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 368351 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242117-250438 bp 2 Locus 2: 323721-324078 bp Zoom in on locus 1 Zoom in on locus 2 x6 Gene: cd09641:cas3HD Type: Type-I Location: 242117-244525 bp Gene: cd09693:cas5 Type: Type-I Location: 244552-245349 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 245365-246381 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 246401-247876 bp Gene: pfam01881:cas6 Type: other Location: 247881-248618 bp Gene: unk Type: unknown Location: 248719-248895 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 249329-250438 bp CRISPR array Location: 323721-324078 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 323721-324078 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 323721-324078 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPET01000033.1 Clostridioides difficile strain 7451-NonSp/ST2 LCH7451_contig000033, whole genome shotgun sequence

⇒Summary: seq-len = 8312 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2974-3591 bp Zoom in on locus 1 x10 CRISPR array Location: 2974-3591 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2974-3591 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2974-3591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPET01000013.1 Clostridioides difficile strain 7451-NonSp/ST2 LCH7451_contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 131387 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39790-40349 bp Zoom in on locus 1 x9 CRISPR array Location: 39790-40349 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 39790-40349 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39790-40349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MPET01000004.1 Clostridioides difficile strain 7451-NonSp/ST2 LCH7451_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 297136 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129951-130045 bp Zoom in on locus 1 x2 CRISPR array Location: 129951-130045 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 129951-130045 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 129951-130045 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)