CRISPRone

CRISPRone report for GCA_002302125.1_ASM230212v1

♦ Seq 1: MPEW01000577.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000580, whole genome shotgun sequence

⇒Summary: seq-len = 3470 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2068-3284 bp Zoom in on locus 1 x19 CRISPR array Location: 2068-3284 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 2068-3284 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2068-3284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPEW01000305.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000306, whole genome shotgun sequence

⇒Summary: seq-len = 14333 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6193-14058 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 6193-8601 bp Gene: cd09693:cas5 Type: Type-I Location: 8628-9425 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 9441-10454 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 10474-11949 bp Gene: pfam01881:cas6 Type: other Location: 11954-12691 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 12949-14058 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPEW01000225.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000226, whole genome shotgun sequence

⇒Summary: seq-len = 6181 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4024-4183 bp Zoom in on locus 1 x3 CRISPR array Location: 4024-4183 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4024-4183 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4024-4183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPEW01000440.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000441, whole genome shotgun sequence

⇒Summary: seq-len = 4188 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1079 bp Zoom in on locus 1 x17 CRISPR array Location: 0-1079 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 0-1079 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1079 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPEW01000226.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000227, whole genome shotgun sequence

⇒Summary: seq-len = 36853 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13947-25221 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 13947-14834 bp Gene: pfam01881:cas6 Type: other Location: 14912-15649 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 15655-17532 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 17534-18448 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 18450-19151 bp Gene: COG1203:cas3 Type: Type-I Location: 19162-21483 bp Gene: pfam01930:cas4 Type: Type-I Location: 21498-22049 bp Gene: cd09722:cas1 Type: universal Location: 22052-23032 bp Gene: cd09725:cas2 Type: universal Location: 23035-23301 bp CRISPR array Location: 23485-25221 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 23485-25221 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23485-25221 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPEW01000157.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000158, whole genome shotgun sequence

⇒Summary: seq-len = 17430 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12215-13229 bp Zoom in on locus 1 x16 CRISPR array Location: 12215-13229 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 12215-13229 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12215-13229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MPEW01000230.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000231, whole genome shotgun sequence

⇒Summary: seq-len = 20048 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4091-4648 bp Zoom in on locus 1 x9 CRISPR array Location: 4091-4648 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4091-4648 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4091-4648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: MPEW01000331.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000332, whole genome shotgun sequence

⇒Summary: seq-len = 59927 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59559-59918 bp Zoom in on locus 1 x6 CRISPR array Location: 59559-59918 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 59559-59918 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59559-59918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: MPEW01000164.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000165, whole genome shotgun sequence

⇒Summary: seq-len = 9939 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6084-6378 bp Zoom in on locus 1 x5 CRISPR array Location: 6084-6378 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 6084-6378 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6084-6378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: MPEW01000310.1 Clostridioides difficile strain 7456-DH/ST42 7456_contig000311, whole genome shotgun sequence

⇒Summary: seq-len = 14108 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 514-1920 bp Zoom in on locus 1 x22 CRISPR array Location: 514-1920 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 514-1920 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 514-1920 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)