CRISPRone

CRISPRone report for GCA_002302165.1_ASM230216v1

♦ Seq 1: MPEY01000001.1 Clostridioides difficile strain 7459-G/ST8 LCH7459_contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 449550 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185250-185543 bp 2 Locus 2: 393685-394106 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 CRISPR array Location: 185250-185543 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 185250-185543 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 393685-394106 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 393685-394106 bp Num of repeats: 7 Spacers: s5-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185250-185543 bp]: array | spacers
           [Locus range 393685-394106 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPEY01000014.1 Clostridioides difficile strain 7459-G/ST8 LCH7459_contig000014, whole genome shotgun sequence

⇒Summary: seq-len = 138792 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135643-135869 bp Zoom in on locus 1 x4 CRISPR array Location: 135643-135869 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135643-135869 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135643-135869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MPEY01000008.1 Clostridioides difficile strain 7459-G/ST8 LCH7459_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 169765 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164177-164339 bp Zoom in on locus 1 x3 CRISPR array Location: 164177-164339 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 164177-164339 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164177-164339 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MPEY01000005.1 Clostridioides difficile strain 7459-G/ST8 LCH7459_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 233084 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2924-3675 bp 2 Locus 2: 193177-205233 bp Zoom in on locus 1 x12 Zoom in on locus 2 x46 CRISPR array Location: 2924-3675 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2924-3675 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09652:cas6 Type: other Location: 193177-193872 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 193884-195623 bp Gene: pfam05107:cas7b Type: Type-I Location: 195616-196605 bp Gene: cd09693:cas5 Type: Type-I Location: 196607-197347 bp Gene: cd09641:cas3HD Type: Type-I Location: 197371-199929 bp CRISPR array Location: 200119-203121 bp Num of repeats: 46 Spacers: s12-s56 CRISPR array Location: 200119-203121 bp Num of repeats: 46 Spacers: s12-s56 Gene: pfam01930:cas4 Type: Type-I Location: 203205-203699 bp Gene: cd09722:cas1 Type: universal Location: 203725-204732 bp Gene: cd09725:cas2 Type: universal Location: 204943-205233 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2924-3675 bp]: array | spacers
           [Locus range 200119-203121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MPEY01000003.1 Clostridioides difficile strain 7459-G/ST8 LCH7459_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 336814 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 152958-160823 bp 2 Locus 2: 234071-234628 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 152958-155366 bp Gene: cd09693:cas5 Type: Type-I Location: 155393-156190 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 156206-157219 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 157239-158714 bp Gene: pfam01881:cas6 Type: other Location: 158719-159456 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 159714-160823 bp CRISPR array Location: 234071-234628 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 234071-234628 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 234071-234628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MPEY01000018.1 Clostridioides difficile strain 7459-G/ST8 LCH7459_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 99590 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38254-38615 bp Zoom in on locus 1 x6 CRISPR array Location: 38254-38615 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38254-38615 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38254-38615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)